+Open data
-Basic information
Entry | Database: PDB / ID: 6iy8 | ||||||
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Title | DmpR-phenol complex of Pseudomonas putida | ||||||
Components | Positive regulator CapR | ||||||
Keywords | GENE REGULATION / phenol / transcription / DmpR / CapR / ATPase | ||||||
Function / homology | Function and homology information transcription factor binding / sequence-specific DNA binding / regulation of DNA-templated transcription / ATP binding Similarity search - Function | ||||||
Biological species | Pseudomonas putida (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.42 Å | ||||||
Authors | Park, K.H. / Woo, E.J. | ||||||
Citation | Journal: Nat Commun / Year: 2020 Title: Tetrameric architecture of an active phenol-bound form of the AAA+transcriptional regulator DmpR. Authors: Park, K.H. / Kim, S. / Lee, S.J. / Cho, J.E. / Patil, V.V. / Dumbrepatil, A.B. / Song, H.N. / Ahn, W.C. / Joo, C. / Lee, S.G. / Shingler, V. / Woo, E.J. #1: Journal: Structure / Year: 2016 Title: Structural Analysis of the Phenol-Responsive Sensory Domain of the Transcription Activator PoxR. Authors: Patil, V.V. / Park, K.H. / Lee, S.G. / Woo, E.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6iy8.cif.gz | 893.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6iy8.ent.gz | 628.2 KB | Display | PDB format |
PDBx/mmJSON format | 6iy8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6iy8_validation.pdf.gz | 1.7 MB | Display | wwPDB validaton report |
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Full document | 6iy8_full_validation.pdf.gz | 1.7 MB | Display | |
Data in XML | 6iy8_validation.xml.gz | 64.7 KB | Display | |
Data in CIF | 6iy8_validation.cif.gz | 85.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/iy/6iy8 ftp://data.pdbj.org/pub/pdb/validation_reports/iy/6iy8 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
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Noncrystallographic symmetry (NCS) | NCS domain:
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