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Yorodumi- PDB-6h7i: Trpzip2 structure in presence of exogenous haloprotectant molecule. -
+Open data
-Basic information
Entry | Database: PDB / ID: 6h7i | ||||||
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Title | Trpzip2 structure in presence of exogenous haloprotectant molecule. | ||||||
Components | Trpzip2 | ||||||
Keywords | DE NOVO PROTEIN / Stabilisation / Halophilic | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Prior, S.H. | ||||||
Citation | Journal: To Be Published Title: Trpzip2 structure in presence of exogenous haloprotectant molecule. Authors: Prior, S.H. / Scowen, I.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6h7i.cif.gz | 74.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6h7i.ent.gz | 55.3 KB | Display | PDB format |
PDBx/mmJSON format | 6h7i.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6h7i_validation.pdf.gz | 379.5 KB | Display | wwPDB validaton report |
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Full document | 6h7i_full_validation.pdf.gz | 490.4 KB | Display | |
Data in XML | 6h7i_validation.xml.gz | 6.9 KB | Display | |
Data in CIF | 6h7i_validation.cif.gz | 10.5 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/h7/6h7i ftp://data.pdbj.org/pub/pdb/validation_reports/h7/6h7i | HTTPS FTP |
-Related structure data
Related structure data | 6h7qC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1608.776 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: Synthetic / Source: (synth.) synthetic construct (others) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Sample state: isotropic / Type: 2D 1H-1H NOESY |
-Sample preparation
Details | Type: solution Contents: 3 mM Trpzip2, 50 mM potassium phosphate, 90% H2O/10% D2O Details: 3 mM Trpzip2 50 mM potassium phosphate, pH 5.5 / Label: Natural abundance / Solvent system: 90% H2O/10% D2O | ||||||||||||
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Sample |
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Sample conditions | Ionic strength: 50 mM / Label: Std / pH: 5.5 / Pressure: 1 atm / Temperature: 300 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 500 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 3 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 20 / Conformers submitted total number: 20 |