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Open data
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Basic information
Entry | Database: PDB / ID: 2mfv | ||||||
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Title | Structure of lasso peptide xanthomonin ii | ||||||
![]() | Xanthomonin II | ||||||
![]() | UNKNOWN FUNCTION / LASSO PEPTIDE / SEVEN-RESIDUE LASSO RING | ||||||
Function / homology | Uncharacterized protein![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model details | lowest energy, model 1 | ||||||
![]() | Hegemann, J.D. / Zimmermann, M. / Harms, K. / Xie, X. / Marahiel, M.A. | ||||||
![]() | ![]() Title: Xanthomonin I-III are Lasso Peptides Featuring Macrolactam Rings Consisting of Only Seven Amino Acids Authors: Hegemann, J.D. / Zimmermann, M. / Zhu, S. / Harms, H.S. / Xie, X. / Marahiel, M.A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 53.9 KB | Display | ![]() |
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PDB format | ![]() | 41.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 373.7 KB | Display | ![]() |
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Full document | ![]() | 413.5 KB | Display | |
Data in XML | ![]() | 5.2 KB | Display | |
Data in CIF | ![]() | 7.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 1289.413 Da / Num. of mol.: 1 / Fragment: UNP residues 29-42 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 8.8 mM XANTHOMONIN II, DMSO / Solvent system: DMSO |
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Sample | Conc.: 8.8 mM / Component: XANTHOMONIN II-1 |
Sample conditions | Pressure: ambient / Temperature: 305 K |
-NMR measurement
NMR spectrometer | Type: Bruker Avance / Manufacturer: Bruker / Model: Avance / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 50 / Conformers submitted total number: 15 |