+Open data
-Basic information
Entry | Database: PDB / ID: 6duu | ||||||
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Title | Three-Dimensional Structures for mastoparano-MO | ||||||
Components | mastoparano-MO | ||||||
Keywords | TOXIN / SDS micelles / PAM | ||||||
Function / homology | Function and homology information other organism cell membrane / defense response to fungus / toxin activity / killing of cells of another organism / defense response to bacterium / innate immune response / extracellular region / membrane Similarity search - Function | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Alves, E.S.F. / Rodrigues, L.V. / Liao, L.M. | ||||||
Citation | Journal: To Be Published Title: Three-Dimensional Structures for mastoparano-L Authors: Alves, E.S.F. / Rodrigues, L.V. / Liao, L.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6duu.cif.gz | 58.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6duu.ent.gz | 46.9 KB | Display | PDB format |
PDBx/mmJSON format | 6duu.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6duu_validation.pdf.gz | 367.8 KB | Display | wwPDB validaton report |
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Full document | 6duu_full_validation.pdf.gz | 416.5 KB | Display | |
Data in XML | 6duu_validation.xml.gz | 6.4 KB | Display | |
Data in CIF | 6duu_validation.cif.gz | 8.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/du/6duu ftp://data.pdbj.org/pub/pdb/validation_reports/du/6duu | HTTPS FTP |
-Related structure data
Related structure data | 6dulC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2064.685 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) synthetic construct (others) / Production host: synthetic construct (others) / References: UniProt: P01514*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 1 mM mastoparano-MO, 100 mM [U-98% 2H] SDS-D25, 5 % v/v [U-98% 2H] TMSP-d4, 90 % v/v H2O, 10 % v/v [U-99% 2H] D2O, 90% H2O/10% D2O Label: Mastoparano-MO / Solvent system: 90% H2O/10% D2O | ||||||||||||||||||||||||
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Sample |
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Sample conditions | Ionic strength: acid Not defined / Label: mastoparano-MO / pH: 4 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 500 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 10 |