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Yorodumi- PDB-6cjj: Candida albicans Hsp90 nucleotide binding domain in complex with ADP -
+Open data
-Basic information
Entry | Database: PDB / ID: 6cjj | ||||||
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Title | Candida albicans Hsp90 nucleotide binding domain in complex with ADP | ||||||
Components | Heat shock protein 90 homolog | ||||||
Keywords | CHAPERONE / Hsp90. ATPase / Structural Genomics / Structural Genomics Consortium / SGC | ||||||
Function / homology | Function and homology information negative regulation of filamentous growth of a population of unicellular organisms / filamentous growth of a population of unicellular organisms / hyphal cell wall / fungal-type cell wall / filamentous growth / nuclear receptor-mediated steroid hormone signaling pathway / ATP-dependent protein folding chaperone / disordered domain specific binding / extracellular vesicle / unfolded protein binding ...negative regulation of filamentous growth of a population of unicellular organisms / filamentous growth of a population of unicellular organisms / hyphal cell wall / fungal-type cell wall / filamentous growth / nuclear receptor-mediated steroid hormone signaling pathway / ATP-dependent protein folding chaperone / disordered domain specific binding / extracellular vesicle / unfolded protein binding / protein folding / cellular response to heat / regulation of apoptotic process / protein stabilization / perinuclear region of cytoplasm / cell surface / ATP hydrolysis activity / protein-containing complex / ATP binding / membrane / plasma membrane / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Candida albicans (yeast) | ||||||
Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 1.74 Å | ||||||
Authors | Hutchinson, A. / Loppnau, P. / Bountra, C. / Edwards, A.M. / Arrowsmith, C.H. / Hui, R. / STRUCTURAL GENOMICS CONSORTIUM, S.G.C. / Pizarro, J.C. / Structural Genomics Consortium (SGC) | ||||||
Citation | Journal: Nat Commun / Year: 2019 Title: Structural basis for species-selective targeting of Hsp90 in a pathogenic fungus. Authors: Whitesell, L. / Robbins, N. / Huang, D.S. / McLellan, C.A. / Shekhar-Guturja, T. / LeBlanc, E.V. / Nation, C.S. / Hui, R. / Hutchinson, A. / Collins, C. / Chatterjee, S. / Trilles, R. / Xie, ...Authors: Whitesell, L. / Robbins, N. / Huang, D.S. / McLellan, C.A. / Shekhar-Guturja, T. / LeBlanc, E.V. / Nation, C.S. / Hui, R. / Hutchinson, A. / Collins, C. / Chatterjee, S. / Trilles, R. / Xie, J.L. / Krysan, D.J. / Lindquist, S. / Porco Jr., J.A. / Tatu, U. / Brown, L.E. / Pizarro, J. / Cowen, L.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6cjj.cif.gz | 108.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6cjj.ent.gz | 81.7 KB | Display | PDB format |
PDBx/mmJSON format | 6cjj.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6cjj_validation.pdf.gz | 793.6 KB | Display | wwPDB validaton report |
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Full document | 6cjj_full_validation.pdf.gz | 794.9 KB | Display | |
Data in XML | 6cjj_validation.xml.gz | 13 KB | Display | |
Data in CIF | 6cjj_validation.cif.gz | 18.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cj/6cjj ftp://data.pdbj.org/pub/pdb/validation_reports/cj/6cjj | HTTPS FTP |
-Related structure data
Related structure data | 6cjiSC 6cjlC 6cjpC 6cjrC 6cjsC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 26208.641 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Candida albicans (strain SC5314 / ATCC MYA-2876) (yeast) Strain: SC5314 / ATCC MYA-2876 Gene: HSP90, CAALFM_C702030WA, CaJ7.0234, CaO19.13868, CaO19.6515 Plasmid: pET15-MHL / Production host: Escherichia coli (E. coli) / Strain (production host): Rossetta 2 / References: UniProt: P46598 | ||||||
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#2: Chemical | #3: Chemical | ChemComp-ADP / | #4: Chemical | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.82 Å3/Da / Density % sol: 56.45 % |
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Crystal grow | Temperature: 298.15 K / Method: vapor diffusion, sitting drop / pH: 7.5 / Details: 100mM Hepes 2M ammonium sulfate 2% PEG 400 |
-Data collection
Diffraction | Mean temperature: 120 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU MICROMAX-007 HF / Wavelength: 1.54178 Å |
Detector | Type: RIGAKU SATURN A200 / Detector: CCD / Date: Oct 1, 2013 |
Radiation | Monochromator: Cu / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54178 Å / Relative weight: 1 |
Reflection | Resolution: 1.74→50 Å / Num. obs: 31576 / % possible obs: 100 % / Redundancy: 15.1 % / Rmerge(I) obs: 0.076 / Net I/σ(I): 17.1 |
Reflection shell | Resolution: 1.74→1.77 Å / Redundancy: 12.6 % / Rmerge(I) obs: 0.8 / Mean I/σ(I) obs: 3.8 / Num. unique obs: 1563 / % possible all: 100 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 6CJI Resolution: 1.74→30 Å / Cross valid method: FREE R-VALUE
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Displacement parameters | Biso mean: 28.75 Å2 | ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.74→30 Å
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