Entry Database : PDB / ID : 6brb Structure visualization Downloads & linksTitle Novel non-antibody protein scaffold targeting CD40L Components Details Keywords STRUCTURAL PROTEIN/IMMUNE SYSTEM / Tn3 related / TNF ligand related / STRUCTURAL PROTEIN-IMMUNE SYSTEM complexFunction / homology Function and homology informationFunction Domain/homology Component
perisynaptic extracellular matrix / CD40 receptor binding / tenascin complex / interstitial matrix / mesenchymal-epithelial cell signaling involved in prostate gland development / peripheral nervous system axon regeneration / bud outgrowth involved in lung branching / CD40 signaling pathway / cellular response to prostaglandin D stimulus / syndecan binding ... perisynaptic extracellular matrix / CD40 receptor binding / tenascin complex / interstitial matrix / mesenchymal-epithelial cell signaling involved in prostate gland development / peripheral nervous system axon regeneration / bud outgrowth involved in lung branching / CD40 signaling pathway / cellular response to prostaglandin D stimulus / syndecan binding / TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway / response to fibroblast growth factor / cellular response to vitamin D / prostate gland epithelium morphogenesis / positive regulation of endothelial cell apoptotic process / isotype switching / negative regulation of cell adhesion / tumor necrosis factor receptor binding / regulation of immunoglobulin production / extracellular matrix structural constituent / neuromuscular junction development / leukocyte cell-cell adhesion / Syndecan interactions / positive regulation of interleukin-4 production / B cell proliferation / odontogenesis of dentin-containing tooth / positive regulation of interleukin-10 production / basement membrane / ECM proteoglycans / Integrin cell surface interactions / regulation of cell adhesion / response to mechanical stimulus / cellular response to retinoic acid / positive regulation of T cell proliferation / regulation of cell migration / T cell costimulation / positive regulation of interleukin-12 production / protein serine/threonine kinase activator activity / B cell differentiation / cytokine activity / TNFR2 non-canonical NF-kB pathway / integrin-mediated signaling pathway / morphogenesis of an epithelium / regulation of cell growth / Post-translational protein phosphorylation / platelet activation / response to wounding / osteoblast differentiation / Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) / Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell / integrin binding / positive regulation of NF-kappaB transcription factor activity / regulation of inflammatory response / response to ethanol / collagen-containing extracellular matrix / cell adhesion / inflammatory response / endoplasmic reticulum lumen / external side of plasma membrane / focal adhesion / positive regulation of cell population proliferation / positive regulation of gene expression / negative regulation of apoptotic process / Golgi apparatus / cell surface / extracellular space / extracellular region / membrane / plasma membrane Similarity search - Function CD40 ligand / Tenascin, EGF-like domain / Tenascin EGF domain / Tumour necrosis factor, conserved site / Tumor necrosis factor (TNF) homology domain (THD) signature. / Tumour necrosis factor family. / TNF(Tumour Necrosis Factor) family / Tumour necrosis factor domain / Tumor necrosis factor (TNF) homology domain (THD) profile. / Fibrinogen-related domains (FReDs) ... CD40 ligand / Tenascin, EGF-like domain / Tenascin EGF domain / Tumour necrosis factor, conserved site / Tumor necrosis factor (TNF) homology domain (THD) signature. / Tumour necrosis factor family. / TNF(Tumour Necrosis Factor) family / Tumour necrosis factor domain / Tumor necrosis factor (TNF) homology domain (THD) profile. / Fibrinogen-related domains (FReDs) / Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 / Fibrinogen beta and gamma chains, C-terminal globular domain / Jelly Rolls - #40 / Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain / Fibrinogen-like, C-terminal / Fibrinogen C-terminal domain profile. / Tumour necrosis factor-like domain superfamily / EGF-like domain, extracellular / EGF-like domain / Epidermal growth factor-like domain. / EGF-like domain profile. / EGF-like domain signature 2. / EGF-like domain signature 1. / Fibronectin type III domain / EGF-like domain / Fibronectin type 3 domain / Fibronectin type-III domain profile. / Fibronectin type III / Fibronectin type III superfamily / Jelly Rolls / Immunoglobulins / Immunoglobulin-like fold / Immunoglobulin-like / Sandwich / Mainly Beta Similarity search - Domain/homologyBiological species Homo sapiens (human)Escherichia coli (E. coli)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.82 Å DetailsAuthors Oganesyan, V. / Baca, M. / Thisted, T. / Grinberg, L. / Wu, H. / Dall'Acqua, W.F. CitationJournal : Sci Transl Med / Year : 2019Title : A CD40L-targeting protein reduces autoantibodies and improves disease activity in patients with autoimmunity.Authors: Karnell, J.L. / Albulescu, M. / Drabic, S. / Wang, L. / Moate, R. / Baca, M. / Oganesyan, V. / Gunsior, M. / Thisted, T. / Yan, L. / Li, J. / Xiong, X. / Eck, S.C. / de Los Reyes, M. / ... Authors : Karnell, J.L. / Albulescu, M. / Drabic, S. / Wang, L. / Moate, R. / Baca, M. / Oganesyan, V. / Gunsior, M. / Thisted, T. / Yan, L. / Li, J. / Xiong, X. / Eck, S.C. / de Los Reyes, M. / Yusuf, I. / Streicher, K. / Muller-Ladner, U. / Howe, D. / Ettinger, R. / Herbst, R. / Drappa, J. History Deposition Nov 30, 2017 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Dec 5, 2018 Provider : repository / Type : Initial releaseRevision 1.1 Jun 19, 2019 Group : Data collection / Database references / Category : citation / citation_authorItem : _citation.country / _citation.journal_abbrev ... _citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year Revision 2.0 Jul 29, 2020 Group : Atomic model / Data collection ... Atomic model / Data collection / Derived calculations / Structure summary Category : atom_site / chem_comp ... atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / struct_asym / struct_conn / struct_site / struct_site_gen Item : _atom_site.auth_asym_id / _atom_site.auth_seq_id ... _atom_site.auth_asym_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_entity_id / _chem_comp.name / _chem_comp.type / _pdbx_struct_assembly_gen.asym_id_list / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id Description : Carbohydrate remediation / Provider : repository / Type : RemediationRevision 2.1 Oct 4, 2023 Group : Data collection / Database references ... Data collection / Database references / Refinement description / Structure summary Category : chem_comp / chem_comp_atom ... chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item : _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession
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