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Open data
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Basic information
Entry | Database: PDB / ID: 6b63 | ||||||
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Title | IMPase (AF2372) with 25 mM Asp | ||||||
![]() | Fructose-1,6-bisphosphatase/inositol-1-monophosphatase | ||||||
![]() | ![]() ![]() | ||||||
Function / homology | ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Goldstein, R.I. / Roberts, M. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Osmolyte binding capacity of a dual action IMPase/FBPase (AF2372) Authors: Goldstein, R.I. / Roberts, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 118.5 KB | Display | ![]() |
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PDB format | ![]() | 91 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 6b5zC ![]() 6b60C ![]() 6b61C ![]() 6b62C ![]() 6b64C ![]() 6b65C ![]() 6b66C ![]() 1lbvS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
-Protein , 1 types, 2 molecules AB
#1: Protein | Mass: 28002.838 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126 Gene: suhB, AF_2372 / Production host: ![]() ![]() ![]() References: UniProt: O30298, fructose-bisphosphatase, ![]() |
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-Non-polymers , 6 types, 97 molecules ![](data/chem/img/CU7.gif)
![](data/chem/img/PO4.gif)
![](data/chem/img/MG.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/EPE.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/PO4.gif)
![](data/chem/img/MG.gif)
![](data/chem/img/SO4.gif)
![](data/chem/img/EPE.gif)
![](data/chem/img/HOH.gif)
#2: Chemical | ChemComp-CU7 / ( #3: Chemical | ![]() #4: Chemical | ChemComp-MG / #5: Chemical | ![]() #6: Chemical | ![]() #7: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 4.22 Å3/Da / Density % sol: 70.86 % |
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Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 7 Details: 100 mM myo inositol 200 mM alpha diglycerol phosphate 4% PEG 3350 200 mM potassium sulfate 100 mM magnesium chloride 100 mM Hepes 7.0 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IV++ / Detector: IMAGE PLATE / Date: Sep 6, 2012 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.69→33.97 Å / Num. obs: 25201 / % possible obs: 99.81 % / Redundancy: 3.7 % / Net I/σ(I): 2.279 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 1LBV Resolution: 2.696→33.97 Å / SU ML: 0.36 / Cross valid method: FREE R-VALUE / σ(F): 1.98 / Phase error: 24.89
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.696→33.97 Å
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Refine LS restraints |
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LS refinement shell |
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