登録情報 | データベース: PDB / ID: 6asz |
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タイトル | Chromodomain HP1 with Y24F mutation bound to histone H3 peptide containing trimethyl lysine |
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要素 | - Heterochromatin protein 1
- trimethyl lysine histone H3 tail peptide
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キーワード | TRANSCRIPTION / histone reader |
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機能・相同性 | 機能・相同性情報
protein localization to euchromatin / positive regulation of FACT complex assembly / polytene chromosome chromocenter / polytene chromosome puff / Interleukin-7 signaling / Chromatin modifying enzymes / RCAF complex / Factors involved in megakaryocyte development and platelet production / SIRT1 negatively regulates rRNA expression / NoRC negatively regulates rRNA expression ...protein localization to euchromatin / positive regulation of FACT complex assembly / polytene chromosome chromocenter / polytene chromosome puff / Interleukin-7 signaling / Chromatin modifying enzymes / RCAF complex / Factors involved in megakaryocyte development and platelet production / SIRT1 negatively regulates rRNA expression / NoRC negatively regulates rRNA expression / Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 / RNA Polymerase I Promoter Escape / Formation of the beta-catenin:TCF transactivating complex / PRC2 methylates histones and DNA / HDACs deacetylate histones / Transcriptional regulation by small RNAs / Estrogen-dependent gene expression / RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function / Senescence-Associated Secretory Phenotype (SASP) / satellite DNA binding / HATs acetylate histones / Assembly of the ORC complex at the origin of replication / Oxidative Stress Induced Senescence / positive regulation of DNA methylation-dependent heterochromatin formation / chromocenter / polytene chromosome / rDNA binding / pericentric heterochromatin formation / condensed chromosome, centromeric region / regulation of protein localization to chromatin / RNA polymerase binding / RNA polymerase II C-terminal domain binding / chromosome, centromeric region / chromosome organization / heterochromatin / pericentric heterochromatin / heterochromatin formation / condensed chromosome / nucleosomal DNA binding / Hsp70 protein binding / methylated histone binding / telomere maintenance / euchromatin / structural constituent of chromatin / nucleosome / nucleosome assembly / chromatin organization / protein-macromolecule adaptor activity / chromosome / mitotic cell cycle / histone binding / chromosome, telomeric region / protein heterodimerization activity / negative regulation of gene expression / negative regulation of DNA-templated transcription / mRNA binding / chromatin binding / protein-containing complex binding / regulation of DNA-templated transcription / chromatin / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / RNA binding / nucleoplasm / nucleus類似検索 - 分子機能 Chromo shadow domain / Chromo shadow domain / Chromo Shadow Domain / Chromo domain subgroup / Chromo domain, conserved site / Chromo domain signature. / Chromo domain / Chromo (CHRromatin Organisation MOdifier) domain / Chromo and chromo shadow domain profile. / OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #40 ...Chromo shadow domain / Chromo shadow domain / Chromo Shadow Domain / Chromo domain subgroup / Chromo domain, conserved site / Chromo domain signature. / Chromo domain / Chromo (CHRromatin Organisation MOdifier) domain / Chromo and chromo shadow domain profile. / OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #40 / Chromo/chromo shadow domain / Chromatin organization modifier domain / Chromo-like domain superfamily / Histone H3 signature 1. / Histone H3 signature 2. / Histone H3 / Histone H3/CENP-A / Histone H2A/H2B/H3 / Core histone H2A/H2B/H3/H4 / Histone-fold / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / Beta Barrel / Mainly Beta類似検索 - ドメイン・相同性 |
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生物種 | ![](img/tx_arthropod.gif) Drosophila melanogaster (キイロショウジョウバエ) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 1.518 Å |
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データ登録者 | Brustad, E.M. / Baril, S.A. / Waters, M.L. |
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引用 | ジャーナル: J. Am. Chem. Soc. / 年: 2017 タイトル: Investigation of Trimethyllysine Binding by the HP1 Chromodomain via Unnatural Amino Acid Mutagenesis. 著者: Baril, S.A. / Koenig, A.L. / Krone, M.W. / Albanese, K.I. / He, C.Q. / Lee, G.Y. / Houk, K.N. / Waters, M.L. / Brustad, E.M. |
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履歴 | 登録 | 2017年8月27日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2017年12月6日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2017年12月13日 | Group: Database references / カテゴリ: citation Item: _citation.journal_volume / _citation.page_first / _citation.page_last |
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置き換え | 2019年3月27日 | ID: 5KOG |
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改定 1.2 | 2019年3月27日 | Group: Advisory / Data collection / カテゴリ: pdbx_database_PDB_obs_spr |
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改定 1.3 | 2023年10月4日 | Group: Data collection / Database references / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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