- PDB-5zk0: Crystal structure of Peptidyl-tRNA hydrolase mutant -M71A from Vi... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5zk0
Title
Crystal structure of Peptidyl-tRNA hydrolase mutant -M71A from Vibrio cholerae
Components
Peptidyl-tRNA hydrolase
Keywords
HYDROLASE / Peptidyl-tRNA hydrolase / Mutant M71A
Function / homology
Function and homology information
peptidyl-tRNA hydrolase / peptidyl-tRNA hydrolase activity / protein quality control for misfolded or incompletely synthesized proteins / rescue of stalled ribosome / tRNA binding / cytoplasm Similarity search - Function
Resolution: 2.55→100.81 Å / Cor.coef. Fo:Fc: 0.942 / Cor.coef. Fo:Fc free: 0.888 / SU B: 11.121 / SU ML: 0.241 / Cross valid method: THROUGHOUT / ESU R: 0.715 / ESU R Free: 0.326 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.26316
733
5.1 %
RANDOM
Rwork
0.18641
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obs
0.19028
13681
97.21 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK