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Open data
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Basic information
Entry | Database: PDB / ID: 5zc3 | ||||||
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Title | The Crystal Structure of PcRxLR12 | ||||||
![]() | RxLR effector | ||||||
![]() | IMMUNOSUPPRESSANT / RxLR effectors | ||||||
Function / homology | RxLR effector![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zhao, L. / Zhang, X. / Zhu, C. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of the RxLR effector PcRxLR12 from Phytophthora capsici Authors: Zhao, L. / Zhang, X. / Zhang, X. / Song, W. / Li, X. / Feng, R. / Yang, C. / Huang, Z. / Zhu, C. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 322.3 KB | Display | ![]() |
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PDB format | ![]() | 273.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 429.8 KB | Display | ![]() |
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Full document | ![]() | 439.3 KB | Display | |
Data in XML | ![]() | 28.7 KB | Display | |
Data in CIF | ![]() | 39.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 53555.082 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.14 Å3/Da / Density % sol: 42.68 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, sitting drop / pH: 7.5 Details: 100mM HEPES pH 7.5, 6%(w/v) PEG 6000 and 5%(v/v) -2-methyl-2,4-pentanediol |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Dec 9, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9796 Å / Relative weight: 1 |
Reflection | Resolution: 3→47 Å / Num. obs: 19409 / % possible obs: 99.8 % / Redundancy: 7.1 % / Net I/σ(I): 32.3 |
Reflection shell | Resolution: 3→3.1 Å / Redundancy: 6.9 % / Num. unique obs: 1622 / % possible all: 99.8 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 48.48 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.005→47 Å
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Refine LS restraints |
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION
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Refinement TLS params. | Method: refined / Origin x: 137.2092 Å / Origin y: 79.698 Å / Origin z: 196.3175 Å
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Refinement TLS group | Selection details: all |