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Yorodumi- PDB-5yz9: zinc finger domain of METTL3-METTL14 N6-methyladenosine methyltra... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5yz9 | |||||||||||||||||||||
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Title | zinc finger domain of METTL3-METTL14 N6-methyladenosine methyltransferase | |||||||||||||||||||||
Components | N6-adenosine-methyltransferase catalytic subunit | |||||||||||||||||||||
Keywords | RNA BINDING PROTEIN / rna binding / zinc finger / N6-methyladenosine methyltransferase | |||||||||||||||||||||
Function / homology | Function and homology information mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity / mRNA m6A methyltransferase / RNA N6-methyladenosine methyltransferase complex / mRNA m(6)A methyltransferase activity / positive regulation of cap-independent translational initiation / adenosine to inosine editing / endothelial to hematopoietic transition / RNA methyltransferase activity / regulation of meiotic cell cycle / primary miRNA processing ...mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity / mRNA m6A methyltransferase / RNA N6-methyladenosine methyltransferase complex / mRNA m(6)A methyltransferase activity / positive regulation of cap-independent translational initiation / adenosine to inosine editing / endothelial to hematopoietic transition / RNA methyltransferase activity / regulation of meiotic cell cycle / primary miRNA processing / : / RNA methylation / forebrain radial glial cell differentiation / gliogenesis / dosage compensation by inactivation of X chromosome / S-adenosyl-L-methionine binding / regulation of hematopoietic stem cell differentiation / regulation of T cell differentiation / negative regulation of type I interferon-mediated signaling pathway / oogenesis / stem cell population maintenance / mRNA destabilization / negative regulation of Notch signaling pathway / mRNA catabolic process / Processing of Capped Intron-Containing Pre-mRNA / positive regulation of translation / mRNA splicing, via spliceosome / mRNA processing / circadian rhythm / cellular response to UV / spermatogenesis / nuclear body / nuclear speck / protein heterodimerization activity / mRNA binding / innate immune response / DNA damage response / Golgi apparatus / nucleoplasm / nucleus / cytosol Similarity search - Function | |||||||||||||||||||||
Biological species | Homo sapiens (human) | |||||||||||||||||||||
Method | SOLUTION NMR / SOLUTION SCATTERING / simulated annealing | |||||||||||||||||||||
Authors | Dong, X. / Tang, C. / Gong, Z. / Yin, P. / Huang, J.B. | |||||||||||||||||||||
Funding support | China, 6items
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Citation | Journal: Protein Cell / Year: 2019 Title: Solution structure of the RNA recognition domain of METTL3-METTL14 N6-methyladenosine methyltransferase. Authors: Huang, J. / Dong, X. / Gong, Z. / Qin, L.Y. / Yang, S. / Zhu, Y.L. / Wang, X. / Zhang, D. / Zou, T. / Yin, P. / Tang, C. | |||||||||||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5yz9.cif.gz | 751.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5yz9.ent.gz | 657.5 KB | Display | PDB format |
PDBx/mmJSON format | 5yz9.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/yz/5yz9 ftp://data.pdbj.org/pub/pdb/validation_reports/yz/5yz9 | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 11753.191 Da / Num. of mol.: 1 / Mutation: C336S Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: METTL3, MTA70 / Production host: Escherichia coli (E. coli) References: UniProt: Q86U44, mRNA (2'-O-methyladenosine-N6-)-methyltransferase |
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#2: Chemical |
-Experimental details
-Experiment
Experiment |
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NMR experiment |
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-Sample preparation
Details | Type: solution Contents: 20 mM PBS, 100 mM sodium chloride, 90% H2O/10% D2O Label: 15N / Solvent system: 90% H2O/10% D2O | ||||||||||||
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Sample |
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Sample conditions | Ionic strength: 100 mM / Label: condition1 / pH: 6.8 / Pressure: 760 mmHg / Temperature: 303 K |
-Data collection
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | |||||||||||||||
NMR representative | Selection criteria: closest to the average | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 960 / Conformers submitted total number: 25 |