- PDB-5xw6: Crystal structure of the chicken ATP-gated P2X7 receptor channel ... -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 5xw6
Title
Crystal structure of the chicken ATP-gated P2X7 receptor channel in the presence of competitive antagonist TNP-ATP at 3.1 Angstroms
Components
P2X purinoceptor
Keywords
MEMBRANE PROTEIN / Ion channel / Ligand-gated ion channel / P2X receptor / P2X7 receptor / TNP-ATP
Function / homology
Function and homology information
Elevation of cytosolic Ca2+ levels / Platelet homeostasis / The NLRP3 inflammasome / : / positive regulation of lymphocyte apoptotic process / positive regulation of bleb assembly / NAD transport / positive regulation of cytokine production => GO:0001819 / phagolysosome assembly / : ...Elevation of cytosolic Ca2+ levels / Platelet homeostasis / The NLRP3 inflammasome / : / positive regulation of lymphocyte apoptotic process / positive regulation of bleb assembly / NAD transport / positive regulation of cytokine production => GO:0001819 / phagolysosome assembly / : / phospholipid transfer to membrane / purinergic nucleotide receptor activity / extracellularly ATP-gated monoatomic cation channel activity / positive regulation of monoatomic ion transmembrane transport / pore complex assembly / positive regulation of interleukin-1 alpha production / negative regulation of cell volume / response to xenobiotic stimulus => GO:0009410 / positive regulation of gamma-aminobutyric acid secretion / collagen metabolic process / : / plasma membrane phospholipid scrambling / response to fluid shear stress / positive regulation of prostaglandin secretion / bleb assembly / ceramide biosynthetic process / vesicle budding from membrane / cellular response to dsRNA / positive regulation of glutamate secretion / negative regulation of bone resorption / skeletal system morphogenesis / negative regulation of MAPK cascade / positive regulation of mitochondrial depolarization / positive regulation of calcium ion transport into cytosol / response to ATP / response to zinc ion / T cell homeostasis / plasma membrane => GO:0005886 / synaptic vesicle exocytosis / membrane depolarization / membrane protein ectodomain proteolysis / positive regulation of bone mineralization / T cell proliferation / response to electrical stimulus / response to mechanical stimulus / extrinsic apoptotic signaling pathway / release of sequestered calcium ion into cytosol / homeostasis of number of cells within a tissue / sensory perception of pain / positive regulation of glycolytic process / reactive oxygen species metabolic process / mitochondrion organization / positive regulation of interleukin-1 beta production / lipopolysaccharide binding / protein catabolic process / neuromuscular junction / cell morphogenesis / protein processing / response to calcium ion / positive regulation of T cell mediated cytotoxicity / positive regulation of interleukin-6 production / cell-cell junction / presynapse / postsynapse / response to lipopolysaccharide / defense response to Gram-positive bacterium / inflammatory response / external side of plasma membrane / protein phosphorylation / neuronal cell body / ATP binding / identical protein binding Similarity search - Function
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi