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- PDB-5xr1: Structure of FLN IG21 domain in complex with C-terminal peptide o... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5xr1 | ||||||
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Title | Structure of FLN IG21 domain in complex with C-terminal peptide of beta-2 | ||||||
![]() | C-terminal peptide of Integrin beta-2,Filamin-A IG21 domain | ||||||
![]() | SIGNALING PROTEIN / Integrin / cytosolic tail | ||||||
Function / homology | ![]() integrin alphaX-beta2 complex / regulation of membrane repolarization during atrial cardiac muscle cell action potential / regulation of membrane repolarization during cardiac muscle cell action potential / establishment of Sertoli cell barrier / positive regulation of prostaglandin-E synthase activity / positive regulation of neutrophil degranulation / integrin alphaM-beta2 complex / Myb complex / integrin alphaL-beta2 complex / glycoprotein Ib-IX-V complex ...integrin alphaX-beta2 complex / regulation of membrane repolarization during atrial cardiac muscle cell action potential / regulation of membrane repolarization during cardiac muscle cell action potential / establishment of Sertoli cell barrier / positive regulation of prostaglandin-E synthase activity / positive regulation of neutrophil degranulation / integrin alphaM-beta2 complex / Myb complex / integrin alphaL-beta2 complex / glycoprotein Ib-IX-V complex / adenylate cyclase-inhibiting dopamine receptor signaling pathway / formation of radial glial scaffolds / ICAM-3 receptor activity / positive regulation of integrin-mediated signaling pathway / cytoplasmic sequestering of protein / tubulin deacetylation / actin crosslink formation / complement component C3b binding / blood coagulation, intrinsic pathway / protein localization to bicellular tight junction / OAS antiviral response / neutrophil migration / Toll Like Receptor 4 (TLR4) Cascade / positive regulation of actin filament bundle assembly / negative regulation of dopamine metabolic process / cell-cell adhesion via plasma-membrane adhesion molecules / positive regulation of neuron migration / positive regulation of potassium ion transmembrane transport / Cell-extracellular matrix interactions / early endosome to late endosome transport / apical dendrite / Fc-gamma receptor I complex binding / cell-cell junction organization / positive regulation of neural precursor cell proliferation / positive regulation of platelet activation / protein localization to cell surface / heterotypic cell-cell adhesion / integrin complex / positive regulation of leukocyte adhesion to vascular endothelial cell / wound healing, spreading of cells / negative regulation of transcription by RNA polymerase I / megakaryocyte development / cell adhesion mediated by integrin / leukocyte cell-cell adhesion / GP1b-IX-V activation signalling / phagocytosis, engulfment / cortical cytoskeleton / positive regulation of axon regeneration / amyloid-beta clearance / endodermal cell differentiation / receptor clustering / SMAD binding / plasma membrane raft / RHO GTPases activate PAKs / actin filament bundle / brush border / tertiary granule membrane / semaphorin-plexin signaling pathway / ficolin-1-rich granule membrane / cellular response to low-density lipoprotein particle stimulus / mitotic spindle assembly / cilium assembly / potassium channel regulator activity / positive regulation of protein targeting to membrane / epithelial to mesenchymal transition / blood vessel remodeling / Integrin cell surface interactions / specific granule membrane / axonal growth cone / heart morphogenesis / positive regulation of substrate adhesion-dependent cell spreading / regulation of peptidyl-tyrosine phosphorylation / release of sequestered calcium ion into cytosol / regulation of cell migration / cell adhesion molecule binding / heat shock protein binding / neutrophil chemotaxis / cell-matrix adhesion / receptor-mediated endocytosis / positive regulation of superoxide anion generation / dendritic shaft / protein localization to plasma membrane / G protein-coupled receptor binding / integrin-mediated signaling pathway / actin filament / Cell surface interactions at the vascular wall / protein kinase C binding / synapse organization / microglial cell activation / mRNA transcription by RNA polymerase II / establishment of protein localization / trans-Golgi network / negative regulation of protein catabolic process / negative regulation of DNA-binding transcription factor activity / receptor internalization / cerebral cortex development / small GTPase binding / kinase binding / platelet aggregation / Z disc Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
![]() | Chatterjee, D. / Lu, L.Z. / Bhattacharjya, S. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of FLN IG21 domain in complex with C-terminal peptide of beta-2 Authors: Chatterjee, D. / Lu, L.Z. / Bhattachrjya, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 603.2 KB | Display | ![]() |
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PDB format | ![]() | 499.9 KB | Display | ![]() |
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-Validation report
Summary document | ![]() | 472.8 KB | Display | ![]() |
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Full document | ![]() | 786.7 KB | Display | |
Data in XML | ![]() | 56.9 KB | Display | |
Data in CIF | ![]() | 82.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 13757.035 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: Fusion protein of C-terminal peptide of Integrin beta-2 (residues 752-763, P05107 (ITB2_HUMAN)), and Filamin-A IG21 domain (residues 2228-2321, P21333 (FLNA_HUMAN)). Source: (gene. exp.) ![]() Production host: BAC cloning vector attB-P[acman]-ApR-F-2-5-attB (others) References: UniProt: P05107, UniProt: P21333 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution Contents: 300 uM [U-13C; U-15N] FLN IG21 domain, 90% H2O/10% D2O Label: 15N, 13C_ / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 300 uM / Component: FLN IG21 domain / Isotopic labeling: [U-13C; U-15N] |
Sample conditions | Ionic strength: 150 mM / Label: Uniformaly 13C, 15N labeled / pH: 6.2 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 600 MHz |
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Processing
NMR software | Name: CNS / Developer: Brunger A. T. et.al. / Classification: refinement |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 |
NMR representative | Selection criteria: lowest energy |
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |