- PDB-5xoy: Crystal structure of LysK from Thermus thermophilus in complex wi... -
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Basic information
Entry
Database: PDB / ID: 5xoy
Title
Crystal structure of LysK from Thermus thermophilus in complex with Lysine
Components
[LysW]-lysine hydrolase
Keywords
HYDROLASE
Function / homology
Function and homology information
[amino group carrier protein]-lysine hydrolase / lysine biosynthetic process via aminoadipic acid / hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides / cobalt ion binding / zinc ion binding / cytoplasm Similarity search - Function
Journal: Biochem. Biophys. Res. Commun. / Year: 2017 Title: Crystal structure of LysK, an enzyme catalyzing the last step of lysine biosynthesis in Thermus thermophilus, in complex with lysine: Insight into the mechanism for recognition of the amino- ...Title: Crystal structure of LysK, an enzyme catalyzing the last step of lysine biosynthesis in Thermus thermophilus, in complex with lysine: Insight into the mechanism for recognition of the amino-group carrier protein, LysW Authors: Fujita, S. / Cho, S.-H. / Yoshida, A. / Hasebe, F. / Tomita, T. / Kuzuyama, T. / Nishiyama, M.
Resolution: 2.39→35.65 Å / Cor.coef. Fo:Fc: 0.958 / Cor.coef. Fo:Fc free: 0.94 / SU B: 6.723 / SU ML: 0.155 / Cross valid method: THROUGHOUT / ESU R: 0.246 / ESU R Free: 0.204 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2286
2224
5 %
RANDOM
Rwork
0.18845
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obs
0.19047
41817
99.29 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK