+Open data
-Basic information
Entry | Database: PDB / ID: 5xok | ||||||
---|---|---|---|---|---|---|---|
Title | Thanatin Y10M21AA in complex with LPS | ||||||
Components | Thanatin | ||||||
Keywords | ANTIMICROBIAL PROTEIN / Antimicrobial Peptide | ||||||
Function / homology | defense response to fungus / killing of cells of another organism / defense response to bacterium / innate immune response / extracellular region / Thanatin Function and homology information | ||||||
Biological species | Podisus maculiventris (spined soldier bug) | ||||||
Method | SOLUTION NMR / na | ||||||
Authors | Sinha, S. / Bhattacharjya, S. | ||||||
Citation | Journal: To Be Published Title: Thanatin Y10M21AA in complex with LPS Authors: Sinha, S. / Bhattacharjya, S. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 5xok.cif.gz | 293.3 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb5xok.ent.gz | 253.6 KB | Display | PDB format |
PDBx/mmJSON format | 5xok.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5xok_validation.pdf.gz | 450.2 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 5xok_full_validation.pdf.gz | 788.6 KB | Display | |
Data in XML | 5xok_validation.xml.gz | 32 KB | Display | |
Data in CIF | 5xok_validation.cif.gz | 39.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xo/5xok ftp://data.pdbj.org/pub/pdb/validation_reports/xo/5xok | HTTPS FTP |
-Related structure data
Similar structure data | |
---|---|
Other databases |
|
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: Protein/peptide | Mass: 2289.770 Da / Num. of mol.: 2 / Mutation: Y10A, M21A / Source method: obtained synthetically / Source: (synth.) Podisus maculiventris (spined soldier bug) / References: UniProt: P55788 |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-Sample preparation
Details | Type: solution / Contents: 400 uM Thanatin Y10M21AA, 90% H2O/10% D2O / Label: Thanatin Y10M21AA-LPS / Solvent system: 90% H2O/10% D2O |
---|---|
Sample | Conc.: 400 uM / Component: Thanatin Y10M21AA / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength: 0 mM / Label: conditions_1 / pH: 5 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
---|
-Processing
NMR software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: na / Software ordinal: 3 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |