+Open data
-Basic information
Entry | Database: PDB / ID: 5x9k | ||||||
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Title | Structure of AusH from Aspergillus nidulans | ||||||
Components | Austinol synthesis protein H | ||||||
Keywords | ISOMERASE / meroterpenoid / Austinol | ||||||
Function / homology | austinol biosynthetic process / dehydroaustinol biosynthetic process / terpenoid biosynthetic process / Austinol synthesis protein H Function and homology information | ||||||
Biological species | Emericella nidulans FGSC A4 (mold) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.798 Å | ||||||
Authors | Iwabuchi, T. / Matsuda, Y. / Abe, I. | ||||||
Citation | Journal: Nat. Chem. Biol. / Year: 2017 Title: Molecular basis for the unusual ring reconstruction in fungal meroterpenoid biogenesis Authors: Mori, T. / Iwabuchi, T. / Hoshino, S. / Wang, H. / Matsuda, Y. / Abe, I. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5x9k.cif.gz | 77.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5x9k.ent.gz | 56.1 KB | Display | PDB format |
PDBx/mmJSON format | 5x9k.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/x9/5x9k ftp://data.pdbj.org/pub/pdb/validation_reports/x9/5x9k | HTTPS FTP |
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-Related structure data
Related structure data | 5wqfSC 5wqgC 5wqhC 5wqiC 5x9jC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 18901.297 Da / Num. of mol.: 2 / Fragment: UNP residues 46-174 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Emericella nidulans FGSC A4 (mold) / Strain: FGSC A4 / Gene: ausH, AN9249 / Production host: Escherichia coli (E. coli) / References: UniProt: Q5AR31 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 1.79 Å3/Da / Density % sol: 31.14 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop Details: 100 mM Imidazole (pH 8.0), 10% PEG8000, 100 mM Ca(OAc)2 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: Photon Factory / Beamline: AR-NE3A / Wavelength: 1 Å |
Detector | Type: DECTRIS PILATUS 2M-F / Detector: PIXEL / Date: Dec 16, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.798→50 Å / Num. obs: 25080 / % possible obs: 99.5 % / Redundancy: 3.3 % / Rmerge(I) obs: 0.058 / Net I/σ(I): 14.19 |
Reflection shell | Resolution: 1.798→1.91 Å / Redundancy: 3.3 % / Rmerge(I) obs: 0.617 / Mean I/σ(I) obs: 1.85 / Num. unique obs: 3956 / % possible all: 98.4 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: 5WQF Resolution: 1.798→47.055 Å / SU ML: 0.25 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 26.61
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.798→47.055 Å
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Refine LS restraints |
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LS refinement shell |
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