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- PDB-5w1t: X-ray crystal structure of Escherichia coli RNA polymerase and Dk... -

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Basic information

Entry
Database: PDB / ID: 5w1t
TitleX-ray crystal structure of Escherichia coli RNA polymerase and DksA complex
Components
  • (DNA-directed RNA polymerase subunit ...) x 3
  • RNA polymerase sigma factor RpoD
  • RNA polymerase-binding transcription factor DksA
  • RpoZ
KeywordsTRANSFERASE / RNA polymerase / DksA
Function / homology
Function and homology information


sigma factor antagonist complex / guanosine tetraphosphate binding / RNA polymerase complex / submerged biofilm formation / cellular response to cell envelope stress / regulation of DNA-templated transcription initiation / sigma factor activity / bacterial-type flagellum assembly / bacterial-type RNA polymerase core enzyme binding / cytosolic DNA-directed RNA polymerase complex ...sigma factor antagonist complex / guanosine tetraphosphate binding / RNA polymerase complex / submerged biofilm formation / cellular response to cell envelope stress / regulation of DNA-templated transcription initiation / sigma factor activity / bacterial-type flagellum assembly / bacterial-type RNA polymerase core enzyme binding / cytosolic DNA-directed RNA polymerase complex / bacterial-type flagellum-dependent cell motility / nitrate assimilation / regulation of DNA-templated transcription elongation / transcription elongation factor complex / transcription antitermination / cell motility / DNA-templated transcription initiation / ribonucleoside binding / DNA-directed RNA polymerase / DNA-directed RNA polymerase activity / double-strand break repair / response to heat / protein-containing complex assembly / intracellular iron ion homeostasis / protein dimerization activity / response to antibiotic / negative regulation of DNA-templated transcription / regulation of DNA-templated transcription / magnesium ion binding / DNA binding / zinc ion binding / membrane / cytosol / cytoplasm
Similarity search - Function
RNA polymerase-binding transcription factor DksA / : / DnaK suppressor protein DksA, N-terminal domain / DksA, N-terminal domain superfamily / Zinc finger, DksA/TraR C4-type conserved site / Zinc finger, DksA/TraR C4-type, bacteria / Prokaryotic dksA C4-type zinc finger. / Zinc finger, DksA/TraR C4-type / Prokaryotic dksA/traR C4-type zinc finger / Prokaryotic dksA C4-type zinc finger profiles. ...RNA polymerase-binding transcription factor DksA / : / DnaK suppressor protein DksA, N-terminal domain / DksA, N-terminal domain superfamily / Zinc finger, DksA/TraR C4-type conserved site / Zinc finger, DksA/TraR C4-type, bacteria / Prokaryotic dksA C4-type zinc finger. / Zinc finger, DksA/TraR C4-type / Prokaryotic dksA/traR C4-type zinc finger / Prokaryotic dksA C4-type zinc finger profiles. / RNA polymerase sigma factor 70, non-essential domain / Sigma-70, non-essential region / RNA polymerase sigma factor 70, region 1.1 / Sigma-70 factor, region 1.1 superfamily / Sigma-70 factor, region 1.1 / Sigma-70 factors family signature 1. / RNA polymerase sigma factor RpoD, C-terminal / RNA polymerase sigma factor RpoD / : / RNA polymerase sigma-70 region 1.2 / Sigma-70 factor, region 1.2 / RNA polymerase sigma-70 region 3 / Sigma-70 region 3 / Sigma-70 factors family signature 2. / RNA polymerase sigma-70 / RNA polymerase sigma-70 region 4 / Sigma-70, region 4 / RNA polymerase sigma-70 region 2 / RNA polymerase sigma-70 like domain / Sigma-70 region 2 / RNA polymerase sigma factor, region 2 / RNA polymerase sigma factor, region 3/4-like / DNA-directed RNA polymerase, omega subunit / DNA-directed RNA polymerase, subunit beta-prime, bacterial type / DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily / DNA-directed RNA polymerase, beta subunit, external 1 domain / RNA polymerase beta subunit external 1 domain / RNA polymerase, alpha subunit, C-terminal / Bacterial RNA polymerase, alpha chain C terminal domain / DNA-directed RNA polymerase beta subunit, bacterial-type / DNA-directed RNA polymerase, alpha subunit / DNA-directed RNA polymerase, subunit beta-prime / RNA polymerase Rpb6 / RNA polymerase, subunit omega/Rpo6/RPB6 / RNA polymerase Rpb6 / RNA polymerase Rpb2, domain 2 superfamily / RNA polymerase Rpb1, domain 3 superfamily / RPB6/omega subunit-like superfamily / DNA-directed RNA polymerase, insert domain / DNA-directed RNA polymerase, RpoA/D/Rpb3-type / RNA polymerase Rpb3/RpoA insert domain / RNA polymerase Rpb3/Rpb11 dimerisation domain / RNA polymerases D / RNA polymerase Rpb1, clamp domain superfamily / RNA polymerase Rpb1, domain 3 / RNA polymerase Rpb1, domain 3 / RNA polymerase Rpb1, domain 1 / RNA polymerase Rpb1, domain 1 / RNA polymerase, beta subunit, protrusion / RNA polymerase beta subunit / RNA polymerase, alpha subunit / RNA polymerase Rpb1, domain 5 / RNA polymerase Rpb1, domain 4 / RNA polymerase Rpb1, domain 2 / RNA polymerase Rpb1, domain 5 / RNA polymerase Rpb1, domain 4 / DNA-directed RNA polymerase, insert domain superfamily / RNA polymerase, N-terminal / RNA polymerase Rpb2, domain 2 / RNA polymerase Rpb1, funnel domain superfamily / RNA polymerase Rpb2, domain 2 / RNA polymerase I subunit A N-terminus / RNA polymerase, RBP11-like subunit / RNA polymerase, beta subunit, conserved site / RNA polymerase Rpb2, domain 7 / RNA polymerase Rpb2, domain 3 / RNA polymerase Rpb2, OB-fold / RNA polymerase Rpb2, domain 7 / RNA polymerase Rpb2, domain 3 / RNA polymerases beta chain signature. / DNA-directed RNA polymerase, subunit 2, hybrid-binding domain / DNA-directed RNA polymerase, subunit 2 / DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily / RNA polymerase Rpb2, domain 6 / Winged helix-like DNA-binding domain superfamily
Similarity search - Domain/homology
RNA polymerase sigma factor RpoD / DNA-directed RNA polymerase subunit alpha / DNA-directed RNA polymerase subunit omega / DNA-directed RNA polymerase subunit beta' / DNA-directed RNA polymerase subunit beta / RNA polymerase-binding transcription factor DksA
Similarity search - Component
Biological speciesEscherichia coli (E. coli)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 4.5 Å
AuthorsMurakami, K.S. / Molodtsov, V.
Funding support United States, 1items
OrganizationGrant numberCountry
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)GM087350 United States
CitationJournal: Mol. Cell / Year: 2018
Title: Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA.
Authors: Molodtsov, V. / Sineva, E. / Zhang, L. / Huang, X. / Cashel, M. / Ades, S.E. / Murakami, K.S.
History
DepositionJun 4, 2017Deposition site: RCSB / Processing site: RCSB
Revision 1.0Jun 14, 2017Provider: repository / Type: Initial release
Revision 1.1Sep 20, 2017Group: Author supporting evidence / Category: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
Revision 1.2Feb 7, 2018Group: Database references / Category: citation / citation_author
Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.title / _citation.year
Revision 1.3Mar 14, 2018Group: Database references / Category: citation
Item: _citation.journal_abbrev / _citation.journal_id_ISSN ..._citation.journal_abbrev / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title
Revision 1.4Jan 1, 2020Group: Author supporting evidence / Category: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization
Revision 1.5Oct 4, 2023Group: Data collection / Database references / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession
Revision 1.6Oct 23, 2024Group: Structure summary / Category: pdbx_entry_details / pdbx_modification_feature

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: DNA-directed RNA polymerase subunit alpha
B: DNA-directed RNA polymerase subunit alpha
C: DNA-directed RNA polymerase subunit beta
D: DNA-directed RNA polymerase subunit beta'
E: RpoZ
F: RNA polymerase sigma factor RpoD
G: DNA-directed RNA polymerase subunit alpha
H: DNA-directed RNA polymerase subunit alpha
I: DNA-directed RNA polymerase subunit beta
J: DNA-directed RNA polymerase subunit beta'
K: RpoZ
L: RNA polymerase sigma factor RpoD
M: RNA polymerase-binding transcription factor DksA
N: RNA polymerase-binding transcription factor DksA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)955,36422
Polymers954,92314
Non-polymers4418
Water00
1
A: DNA-directed RNA polymerase subunit alpha
B: DNA-directed RNA polymerase subunit alpha
C: DNA-directed RNA polymerase subunit beta
D: DNA-directed RNA polymerase subunit beta'
E: RpoZ
F: RNA polymerase sigma factor RpoD
M: RNA polymerase-binding transcription factor DksA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)477,68211
Polymers477,4627
Non-polymers2214
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
G: DNA-directed RNA polymerase subunit alpha
H: DNA-directed RNA polymerase subunit alpha
I: DNA-directed RNA polymerase subunit beta
J: DNA-directed RNA polymerase subunit beta'
K: RpoZ
L: RNA polymerase sigma factor RpoD
N: RNA polymerase-binding transcription factor DksA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)477,68211
Polymers477,4627
Non-polymers2214
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)184.000, 204.894, 314.312
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number19
Space group name H-MP212121

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Components

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DNA-directed RNA polymerase subunit ... , 3 types, 8 molecules ABGHCIDJ

#1: Protein
DNA-directed RNA polymerase subunit alpha / RNAP subunit alpha / RNA polymerase subunit alpha / Transcriptase subunit alpha


Mass: 36558.680 Da / Num. of mol.: 4
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: rpoA, pez, phs, sez, b3295, JW3257 / Production host: Escherichia coli (E. coli) / References: UniProt: P0A7Z4, DNA-directed RNA polymerase
#2: Protein DNA-directed RNA polymerase subunit beta / RNAP subunit beta / RNA polymerase subunit beta / Transcriptase subunit beta


Mass: 150820.875 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12
Gene: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950
Production host: Escherichia coli (E. coli) / References: UniProt: P0A8V2, DNA-directed RNA polymerase
#3: Protein DNA-directed RNA polymerase subunit beta' / RNAP subunit beta' / RNA polymerase subunit beta' / Transcriptase subunit beta'


Mass: 155366.781 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: rpoC, tabB, b3988, JW3951 / Production host: Escherichia coli (E. coli) / References: UniProt: P0A8T7, DNA-directed RNA polymerase

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Protein , 3 types, 6 molecules EKFLMN

#4: Protein RpoZ


Mass: 10249.547 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Production host: Escherichia coli (E. coli) / References: UniProt: P0A800
#5: Protein RNA polymerase sigma factor RpoD / Sigma-70


Mass: 70352.242 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: rpoD, alt, b3067, JW3039 / Production host: Escherichia coli (E. coli) / References: UniProt: P00579
#6: Protein RNA polymerase-binding transcription factor DksA / DnaK suppressor protein


Mass: 17554.787 Da / Num. of mol.: 2
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: dksA, b0145, JW0141 / Production host: Escherichia coli (E. coli) / References: UniProt: P0ABS1

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Non-polymers , 2 types, 8 molecules

#7: Chemical ChemComp-MG / MAGNESIUM ION


Mass: 24.305 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: Mg
#8: Chemical
ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: Zn

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Details

Has protein modificationY

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 3.1 Å3/Da / Density % sol: 60.35 %
Crystal growTemperature: 298 K / Method: vapor diffusion, hanging drop / pH: 7 / Details: 0.1M HEPES-HCL (PH7), 0.2M CA-ACETATE, 15% PEG400

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Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: CHESS / Beamline: F1 / Wavelength: 0.98 Å
DetectorType: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Apr 14, 2017
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.98 Å / Relative weight: 1
ReflectionResolution: 4.5→50 Å / Num. obs: 70723 / % possible obs: 99.9 % / Redundancy: 6.7 % / Rpim(I) all: 0.046 / Net I/σ(I): 16.6
Reflection shellResolution: 4.5→4.58 Å / Redundancy: 5.7 % / Num. unique obs: 3518 / CC1/2: 0.36 / Rpim(I) all: 0.776 / % possible all: 99.9

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Processing

Software
NameVersionClassification
PHENIX(1.11.1_2575: ???)refinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 4YG2

4yg2


Resolution: 4.5→47.081 Å / SU ML: 0.62 / Cross valid method: FREE R-VALUE / σ(F): 1.33 / Phase error: 28.92
RfactorNum. reflection% reflection
Rfree0.2761 3808 2.83 %
Rwork0.2196 --
obs0.2212 134524 98.84 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å
Refinement stepCycle: LAST / Resolution: 4.5→47.081 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms58058 0 8 0 58066
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00758932
X-RAY DIFFRACTIONf_angle_d1.14779494
X-RAY DIFFRACTIONf_dihedral_angle_d17.90836482
X-RAY DIFFRACTIONf_chiral_restr0.0569036
X-RAY DIFFRACTIONf_plane_restr0.00610441
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
4.4993-4.55620.41411180.35754053X-RAY DIFFRACTION83
4.5562-4.61610.32651350.34584827X-RAY DIFFRACTION99
4.6161-4.67930.35011390.35184862X-RAY DIFFRACTION99
4.6793-4.74610.3361440.33014888X-RAY DIFFRACTION99
4.7461-4.81690.35321410.32424776X-RAY DIFFRACTION98
4.8169-4.89210.33891430.31234785X-RAY DIFFRACTION98
4.8921-4.97220.36581410.30154853X-RAY DIFFRACTION98
4.9722-5.05780.28821390.30534780X-RAY DIFFRACTION99
5.0578-5.14970.3151450.29164933X-RAY DIFFRACTION99
5.1497-5.24860.311440.29334865X-RAY DIFFRACTION100
5.2486-5.35560.31451460.28094888X-RAY DIFFRACTION100
5.3556-5.47190.34091420.27474861X-RAY DIFFRACTION100
5.4719-5.5990.291470.27384932X-RAY DIFFRACTION100
5.599-5.73870.27141430.27064879X-RAY DIFFRACTION100
5.7387-5.89360.27441440.26914902X-RAY DIFFRACTION100
5.8936-6.06670.34321410.25784931X-RAY DIFFRACTION100
6.0667-6.26210.29921400.25044882X-RAY DIFFRACTION100
6.2621-6.48540.26611390.25014861X-RAY DIFFRACTION100
6.4854-6.74430.30461450.23764928X-RAY DIFFRACTION100
6.7443-7.05030.26311420.22934893X-RAY DIFFRACTION100
7.0503-7.42060.23691400.21884888X-RAY DIFFRACTION100
7.4206-7.88360.30331420.20774932X-RAY DIFFRACTION100
7.8836-8.4890.261440.18734875X-RAY DIFFRACTION100
8.489-9.33730.23011440.16934896X-RAY DIFFRACTION100
9.3373-10.67460.26751400.16384865X-RAY DIFFRACTION100
10.6746-13.39740.20141440.15754883X-RAY DIFFRACTION100
13.3974-47.08310.28711360.18674798X-RAY DIFFRACTION98
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
11.17954.5870.21877.2126-1.29950.0793-0.2167-1.0548-0.6260.54840.171-1.1418-0.0337-0.2194-0.06613.07940.26690.04913.62770.10632.095194.848526.082437.9186
20.52161.7543-1.58383.4756-2.75330.9604-1.8787-0.6218-1.2282-1.40412.8219-2.9748-0.52410.251-0.67644.6643-0.3271-0.11525.166-0.14734.137964.724254.327323.7234
32.66442.81751.71152.90441.56072.6982-0.1994-1.0925-0.7603-0.04930.3199-0.95840.654-0.8001-0.06972.7418-0.02990.47353.60820.86392.339670.4658-10.270432.4383
43.06331.6381-1.70317.9941-8.27438.72470.34080.113-0.47110.6725-1.0849-0.6648-0.82540.83570.70852.2421-0.4023-0.53482.31970.12292.5778131.486443.5583-8.5904
51.4181-1.1775-1.1085.09783.27364.63310.06440.2709-0.0654-1.0947-0.048-1.26190.04840.5801-0.08612.9035-0.00180.37212.86120.26982.6856136.16317.6397-42.5778
61.20762.32411.03824.237-1.42192.0764-0.0965-0.1035-0.3753-0.64310.2848-0.49690.24870.0839-0.17111.99210.0539-0.25232.60070.23552.225126.107223.041-7.9673
72.23840.31670.6541.18620.66510.62160.1645-0.6860.07180.4250.0807-0.2219-0.1176-0.0511-0.30652.072-0.07490.00293.07470.18082.031110.25135.838716.1189
83.00511.457-4.97364.74340.06039.09480.054-0.52470.72420.05620.02790.8156-1.1449-0.3944-0.02841.60020.0690.16012.24460.19041.795775.6829.3504-19.1782
91.64030.5582-0.57722.1224-1.03982.8807-0.0332-0.4067-0.35970.1179-0.2168-0.3784-0.0014-0.18370.19951.3097-0.00950.09581.71450.04781.666582.991924.9878-23.4524
102.471-0.48351.92860.3908-0.60212.24930.2783-0.131-1.20190.06220.1582-0.4060.78980.3005-0.24932.5098-0.0310.10722.32680.44613.145396.5427-7.6462-8.7915
112.1437-0.507-1.38812.84891.7835.73190.20631.0628-1.3035-0.7351-0.2217-0.57190.67360.1505-0.05512.1384-0.00590.37562.0051-0.21362.779686.1307-1.0172-38.9117
123.23731.30091.11443.0919-2.31148.4480.6716-1.2635-1.25990.54841.68332.51660.7846-2.5714-1.93382.5228-0.3616-0.07693.76410.54413.488558.370312.3122-4.4587
136.4148-2.21842.42538.166-6.25485.6109-0.1315-0.4739-0.5801-0.6668-0.5607-2.1153-3.2329-1.01710.58483.94860.28060.15893.05860.15243.060839.688224.353-17.9268
141.6222-3.40242.53076.3649-3.23263.00790.1461-0.06250.43560.05430.1854-0.6324-0.70920.2747-0.32083.5351-0.0790.51882.97730.34643.353494.70977.0691-67.2646
153.97622.23242.11115.79685.22418.8388-1.08210.3561-0.1491-1.47240.09733.9153-4.193-2.1592-0.16054.08780.0247-0.66953.51820.63884.472873.832160.4364-84.0288
162.6860.1584-1.26361.99390.97921.58480.19-0.68210.0786-0.61240.0005-0.3431-0.92120.2843-0.19632.73030.03030.16142.2302-0.02882.579294.088560.2937-38.6824
177.5549-5.57848.27537.9112-3.97349.4073-0.88941.69062.5935-0.6667-0.7371-0.5021-2.07-1.04861.49573.05850.00210.25272.8081-0.17763.414255.210363.4-1.402
18-0.5272.94362.29425.11916.53893.6679-0.0857-0.5879-0.3418-1.18080.0172.5758-0.533-0.31290.09072.6953-0.05230.71773.01580.50774.2851-17.5613-39.5467-35.5044
19-1.08641.95951.46528.48764.40761.71350.2794-0.89140.3896-1.23750.3697-0.8499-1.4484-1.1622-0.29793.87210.61761.46723.4296-0.22974.0887-3.4252-3.8768-14.4692
205.151-4.319-2.94563.83162.89884.197-0.20970.84860.30910.1689-0.22330.73460.2866-0.72310.24782.46690.017-0.07232.2363-0.51683.775510.5883-56.4179-87.8538
211.16931.87-2.03932.7022-2.50253.7879-0.18190.0668-0.433-0.5154-0.09090.66450.49580.61550.25622.48950.4374-0.12633.2034-0.46592.845443.3986-27.8572-104.5948
220.67542.7665-2.4213.3887-4.36964.03730.28130.4212-1.26170.1989-0.6160.4866-0.12660.1830.4652.19310.3694-0.40262.7807-0.56793.254429.38-48.1565-92.4985
238.38920.55112.71847.8403-3.49936.5669-0.55762.51150.7722-1.1715-0.2305-0.82550.4711.58210.72483.24570.51420.17263.2789-0.2643.739811.5344-30.2138-83.1068
242.50930.9513-0.25921.2520.60891.67010.64470.3671-0.8105-0.9246-0.50191.61760.5379-1.4249-0.06522.76020.223-0.16413.2425-0.26154.4852-4.4276-37.6557-72.3567
250.8889-1.7911.95652.4795-2.81021.58540.6332-0.0238-1.15450.3111-0.0662.01940.19080.0127-0.55282.4448-0.0910.28392.69370.18444.171114.1674-57.0507-41.1432
266.26192.89690.40091.2480.45170.86140.2272-0.1303-0.2208-0.06780.02760.57021.148-0.4960.04393.6257-0.2224-0.37672.8950.51084.56741.7863-69.4503-57.4456
271.77670.85461.3631-0.16-0.15251.87920.47650.4080.1475-0.47660.2221.17530.3054-0.6511-0.57462.5531-0.02090.08622.98940.1644.0708-7.6377-40.1361-60.8068
288.2513-0.5797-6.9945.77612.04896.0175-0.8616-1.1544-1.22451.02530.4636-0.09520.88980.28380.37322.6471-0.11640.46832.33140.14562.36643.4641-41.5772-38.9344
294.0638-1.1115-1.28124.63730.97314.98650.0896-0.6893-0.50340.05650.0483-0.4079-0.26410.6344-0.03462.21050.12580.1071.8993-0.05042.015565.3664-53.2503-60.4474
302.6991-1.29910.05662.05090.36710.2712-0.0329-0.09940.57880.48580.13060.8795-0.5522-0.1656-0.03222.8628-0.04510.78672.4415-0.07523.024122.3434-13.9519-45.4924
316.6395-0.4866-1.19559.5747-2.55616.9424-1.04280.0433.00811.0132-0.69480.45070.7792-1.56920.82232.3351-0.08680.9192.1177-0.12022.651638.0482-14.7814-44.6884
326.21262.5028-3.30917.6732-3.41137.3447-0.51940.23470.7316-0.80950.0145-0.7319-0.04860.49320.4372.115-0.14240.42351.531-0.20172.312456.9142-12.308-57.0931
339.0204-6.15760.07454.24621.08349.7429-0.5685-5.18152.20420.9208-0.7721-3.63293.22261.5579-0.36964.5446-0.42460.68724.8704-0.53765.628535.4357-25.8312-17.5902
342.00813.2982-0.74225.2554-0.63084.93870.65731.74530.91610.92460.9306-0.2026-0.3672-2.9175-2.13287.22591.33580.01374.96340.22335.73552.5488-30.7269-6.6289
355.2906-4.53332.18998.5902-2.63310.3834-0.1714-0.0693-0.06560.68350.020.0205-0.54590.21730.12193.39550.11310.76122.65540.00922.754882.8988-87.5101-73.2153
360.42510.3185-0.41240.068-0.18550.18870.11270.03441.1791-1.0018-0.8861-1.4166-2.95880.04670.02164.52160.4095-1.35374.11360.21355.1236109.9791-73.9027-60.3831
376.74842.4687-1.42853.5323-0.31994.3188-0.60460.3471-2.1152-0.6184-0.04440.31640.3618-0.76290.60122.7736-0.08240.11392.1523-0.03792.658253.0098-76.0236-75.4023
386.6389-3.8446-2.84138.3902-1.79276.6261-0.8901-1.7883-1.01893.09171.54411.7507-1.8063-1.0108-1.07033.0244-0.0270.73763.00170.39673.214737.5727-68.4915-21.4757
395.0744-7.628-0.50168.2708-0.05330.89990.67312.321-2.0895-2.2861-1.32071.7704-0.4597-0.27680.46235.06220.8156-0.09915.231-0.6415.2838123.9265-20.5428-19.4806
401.4133-2.57642.68473.1345-4.14432.8589-0.66390.9093-1.05421.842-0.70291.0059-1.85720.89751.13175.9884-0.44180.09434.93080.56365.443723.04567.7877-82.4048
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1( CHAIN A AND RESID 7:232 )A7 - 232
2X-RAY DIFFRACTION2( CHAIN A AND RESID 233:325 )A233 - 325
3X-RAY DIFFRACTION3( CHAIN B AND RESID 6:233 )B6 - 233
4X-RAY DIFFRACTION4( CHAIN C AND RESID 3:114 )C3 - 114
5X-RAY DIFFRACTION5( CHAIN C AND RESID 115:437 )C115 - 437
6X-RAY DIFFRACTION6( CHAIN C AND RESID 438:703 )C438 - 703
7X-RAY DIFFRACTION7( CHAIN C AND RESID 704:1252 )C704 - 1252
8X-RAY DIFFRACTION8( CHAIN C AND RESID 1253:1342 )C1253 - 1342
9X-RAY DIFFRACTION9( CHAIN D AND RESID 8:613 )D8 - 613
10X-RAY DIFFRACTION10( CHAIN D AND RESID 614:935 )D614 - 935
11X-RAY DIFFRACTION11( CHAIN D AND RESID 1137:1376 )D1137 - 1376
12X-RAY DIFFRACTION12( CHAIN E AND RESID 2:60 )E2 - 60
13X-RAY DIFFRACTION13( CHAIN E AND RESID 61:90 )E61 - 90
14X-RAY DIFFRACTION14( CHAIN F AND RESID 94:262 )F94 - 262
15X-RAY DIFFRACTION15( CHAIN F AND RESID 263:333 )F263 - 333
16X-RAY DIFFRACTION16( CHAIN F AND RESID 334:562 )F334 - 562
17X-RAY DIFFRACTION17( CHAIN F AND RESID 563:612 )F563 - 612
18X-RAY DIFFRACTION18( CHAIN G AND RESID 7:233 )G7 - 233
19X-RAY DIFFRACTION19( CHAIN H AND RESID 6:233 )H6 - 233
20X-RAY DIFFRACTION20( CHAIN I AND RESID 3:114 )I3 - 114
21X-RAY DIFFRACTION21( CHAIN I AND RESID 115:370 )I115 - 370
22X-RAY DIFFRACTION22( CHAIN I AND RESID 371:519 )I371 - 519
23X-RAY DIFFRACTION23( CHAIN I AND RESID 520:623 )I520 - 623
24X-RAY DIFFRACTION24( CHAIN I AND RESID 624:804 )I624 - 804
25X-RAY DIFFRACTION25( CHAIN I AND RESID 805:906 )I805 - 906
26X-RAY DIFFRACTION26( CHAIN I AND RESID 907:979 )I907 - 979
27X-RAY DIFFRACTION27( CHAIN I AND RESID 980:1262 )I980 - 1262
28X-RAY DIFFRACTION28( CHAIN I AND RESID 1263:1342 )I1263 - 1342
29X-RAY DIFFRACTION29( CHAIN J AND RESID 16:307 )J16 - 307
30X-RAY DIFFRACTION30( CHAIN J AND RESID 308:899 )J308 - 899
31X-RAY DIFFRACTION31( CHAIN J AND RESID 900:935 )J900 - 935
32X-RAY DIFFRACTION32( CHAIN J AND RESID 1137:1375 )J1137 - 1375
33X-RAY DIFFRACTION33( CHAIN K AND RESID 2:60 )K2 - 60
34X-RAY DIFFRACTION34( CHAIN K AND RESID 61:80 )K61 - 80
35X-RAY DIFFRACTION35( CHAIN L AND RESID 94:292 )L94 - 292
36X-RAY DIFFRACTION36( CHAIN L AND RESID 293:354 )L293 - 354
37X-RAY DIFFRACTION37( CHAIN L AND RESID 355:511 )L355 - 511
38X-RAY DIFFRACTION38( CHAIN L AND RESID 512:613 )L512 - 613
39X-RAY DIFFRACTION39( CHAIN M AND ( RESID 12:151 OR RESID 200:200 ) )M12 - 151
40X-RAY DIFFRACTION39( CHAIN M AND ( RESID 12:151 OR RESID 200:200 ) )M200
41X-RAY DIFFRACTION40( CHAIN N AND ( RESID 12:151 OR RESID 200:200 ) )N12 - 151
42X-RAY DIFFRACTION40( CHAIN N AND ( RESID 12:151 OR RESID 200:200 ) )N200

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