- PDB-5vyc: Crystal structure of the human 40S ribosomal subunit in complex w... -
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基本情報
登録情報
データベース: PDB / ID: 5vyc
タイトル
Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
要素
(40S ribosomal protein ...) x 31
60S ribosomal protein L41
Density-regulated protein
Human 18S ribosomal RNA
Malignant T-cell-amplified sequence 1
Receptor of activated protein C kinase 1
Ribosomal protein S27a
キーワード
RIBOSOME / 40S subunit / DENR-MCT-1 / PUA
機能・相同性
機能・相同性情報
translation factor activity, non-nucleic acid binding / IRES-dependent viral translational initiation / translation reinitiation / RNA cap binding / formation of translation preinitiation complex / negative regulation of endoplasmic reticulum unfolded protein response / oxidized pyrimidine DNA binding / response to TNF agonist / positive regulation of base-excision repair / negative regulation of peptidyl-serine phosphorylation ...translation factor activity, non-nucleic acid binding / IRES-dependent viral translational initiation / translation reinitiation / RNA cap binding / formation of translation preinitiation complex / negative regulation of endoplasmic reticulum unfolded protein response / oxidized pyrimidine DNA binding / response to TNF agonist / positive regulation of base-excision repair / negative regulation of peptidyl-serine phosphorylation / positive regulation of respiratory burst involved in inflammatory response / positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage / positive regulation of gastrulation / regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway / protein tyrosine kinase inhibitor activity / IRE1-RACK1-PP2A complex / positive regulation of endodeoxyribonuclease activity / nucleolus organization / positive regulation of Golgi to plasma membrane protein transport / translation at postsynapse / ribosome disassembly / TNFR1-mediated ceramide production / negative regulation of DNA repair / negative regulation of RNA splicing / mammalian oogenesis stage / supercoiled DNA binding / activation-induced cell death of T cells / neural crest cell differentiation / NF-kappaB complex / oxidized purine DNA binding / cysteine-type endopeptidase activator activity involved in apoptotic process / negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide / ubiquitin-like protein conjugating enzyme binding / regulation of establishment of cell polarity / translation at presynapse / positive regulation of ubiquitin-protein transferase activity / Formation of the ternary complex, and subsequently, the 43S complex / negative regulation of phagocytosis / erythrocyte homeostasis / rRNA modification in the nucleus and cytosol / cytoplasmic side of rough endoplasmic reticulum membrane / laminin receptor activity / protein kinase A binding / negative regulation of ubiquitin protein ligase activity / pigmentation / Ribosomal scanning and start codon recognition / ion channel inhibitor activity / Translation initiation complex formation / positive regulation of mitochondrial depolarization / positive regulation of T cell receptor signaling pathway / positive regulation of activated T cell proliferation / fibroblast growth factor binding / negative regulation of Wnt signaling pathway / monocyte chemotaxis / negative regulation of translational frameshifting / Protein hydroxylation / BH3 domain binding / TOR signaling / SARS-CoV-1 modulates host translation machinery / regulation of cell division / mTORC1-mediated signalling / T cell proliferation involved in immune response / Peptide chain elongation / iron-sulfur cluster binding / positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator / Selenocysteine synthesis / positive regulation of signal transduction by p53 class mediator / Formation of a pool of free 40S subunits / endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / ribosomal small subunit binding / ubiquitin ligase inhibitor activity / Eukaryotic Translation Termination / Response of EIF2AK4 (GCN2) to amino acid deficiency / SRP-dependent cotranslational protein targeting to membrane / negative regulation of ubiquitin-dependent protein catabolic process / Viral mRNA Translation / negative regulation of respiratory burst involved in inflammatory response / phagocytic cup / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / GTP hydrolysis and joining of the 60S ribosomal subunit / L13a-mediated translational silencing of Ceruloplasmin expression / erythrocyte development / Major pathway of rRNA processing in the nucleolus and cytosol / regulation of translational fidelity / endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / Protein methylation / spindle assembly / Nuclear events stimulated by ALK signaling in cancer / ribosomal small subunit export from nucleus / positive regulation of intrinsic apoptotic signaling pathway / rough endoplasmic reticulum / laminin binding / translation regulator activity / Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal / positive regulation of cell cycle / translation initiation factor binding / signaling adaptor activity / gastrulation / MDM2/MDM4 family protein binding 類似検索 - 分子機能
DENR family, eukaryotes / DENR, C-terminal domain / : / DENR, N-terminal / MCT-1/Tma20 / Pre-PUA domain / Pre-PUA-like domain / : / Uncharacterised domain CHP00451 / PUA domain ...DENR family, eukaryotes / DENR, C-terminal domain / : / DENR, N-terminal / MCT-1/Tma20 / Pre-PUA domain / Pre-PUA-like domain / : / Uncharacterised domain CHP00451 / PUA domain / SUI1 domain superfamily / Translation initiation factor SUI1 / Translation initiation factor SUI1 family profile. / SUI1 domain / Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase / PUA domain / PUA domain profile. / 40S ribosomal protein SA / 40S ribosomal protein SA, C-terminal domain / 40S ribosomal protein SA C-terminus / PUA-like superfamily / : / Ribosomal protein S26e signature. / Ribosomal protein L41 / Ribosomal protein L41 / Ribosomal protein S21e, conserved site / Ribosomal protein S21e signature. / Ribosomal protein S26e / Ribosomal protein S26e superfamily / Ribosomal protein S26e / : / Ribosomal protein S12e signature. / Ribosomal protein S12e / Ribosomal protein S19e, conserved site / Ribosomal protein S19e signature. / Small (40S) ribosomal subunit Asc1/RACK1 / Ribosomal protein S5, eukaryotic/archaeal / Ribosomal protein S21e / Ribosomal protein S21e superfamily / Ribosomal protein S21e / Ribosomal protein S2, eukaryotic / S27a-like superfamily / 40S Ribosomal protein S10 / : / Ribosomal protein S7e signature. / Plectin/S10, N-terminal / Plectin/S10 domain / Ribosomal protein S10, eukaryotic/archaeal / Ribosomal protein S8e subdomain, eukaryotes / Ribosomal protein S25 / S25 ribosomal protein / Ribosomal protein S27a / Ribosomal protein S17e, conserved site / Ribosomal protein S27a / Ribosomal protein S17e signature. / Ribosomal protein S27a / Ribosomal protein S3Ae, conserved site / Ribosomal protein S3Ae signature. / Ribosomal protein S30 / Ribosomal protein S30 / Ribosomal protein S2, eukaryotic/archaeal / 40S ribosomal protein S29/30S ribosomal protein S14 type Z / Ribosomal protein S27e signature. / 40S ribosomal protein S4, C-terminal domain / 40S ribosomal protein S4 C-terminus / Ribosomal protein S4e, N-terminal, conserved site / Ribosomal protein S4e signature. / Ribosomal protein S3, eukaryotic/archaeal / Ribosomal protein S19e / Ribosomal protein S8e, conserved site / Ribosomal protein S19e / Ribosomal protein S8e signature. / Ribosomal_S19e / Ribosomal protein S6, eukaryotic / Ribosomal protein S7e / Ribosomal protein S7e / 40S ribosomal protein S1/3, eukaryotes / Ribosomal protein S19A/S15e / Ribosomal protein S17e / Ribosomal protein S17e-like superfamily / Ribosomal S17 / 40S ribosomal protein S11, N-terminal / Ribosomal_S17 N-terminal / : / Ribosomal S24e conserved site / Ribosomal protein S24e signature. / Ribosomal protein S4e, N-terminal / RS4NT (NUC023) domain / Ribosomal protein S4, KOW domain / Ribosomal protein S4e / Ribosomal protein S4e, central region / Ribosomal protein S4e, central domain superfamily / Ribosomal family S4e / Ribosomal protein S23, eukaryotic/archaeal / Ribosomal protein S6/S6e/A/B/2, conserved site / Ribosomal protein S6e signature. / Ribosomal protein S24e / Ribosomal protein S24e / Ribosomal protein S27 / Ribosomal protein S27, zinc-binding domain superfamily 類似検索 - ドメイン・相同性
: / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / FAU ubiquitin like and ribosomal protein S30 fusion / Density-regulated protein / Small ribosomal subunit protein eS17 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS5 ...: / RNA / RNA (> 10) / RNA (> 100) / RNA (> 1000) / FAU ubiquitin like and ribosomal protein S30 fusion / Density-regulated protein / Small ribosomal subunit protein eS17 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein uS5 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein eS12 / Small ribosomal subunit protein eS19 / Small ribosomal subunit protein eS27 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein eS10 / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein eS1 / Small ribosomal subunit protein eS7 / Small ribosomal subunit protein eS8 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein uS13 / Small ribosomal subunit protein uS14 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein uS17 / Small ribosomal subunit protein eS4, X isoform / Small ribosomal subunit protein eS6 / Small ribosomal subunit protein uS19 / Small ribosomal subunit protein eS24 / Small ribosomal subunit protein eS25 / Small ribosomal subunit protein eS26 / Small ribosomal subunit protein eS28 / Small ribosomal subunit protein eS32 / Small ribosomal subunit protein eS21 / Small ribosomal subunit protein RACK1 / Ubiquitin-ribosomal protein eS31 fusion protein / Malignant T-cell-amplified sequence 1 類似検索 - 構成要素
生物種
Homo sapiens (ヒト)
手法
X線回折 / シンクロトロン / 分子置換 / 解像度: 6 Å
Model details
Human 40S ribosomal subunit in complex with DENR-MCT-1.
T1: 40S ribosomal protein S19 U1: 40S ribosomal protein S20 V1: 40S ribosomal protein S21 X1: 40S ribosomal protein S23 a1: 40S ribosomal protein S26 c1: 40S ribosomal protein S28 d1: 40S ribosomal protein S29 f1: Ribosomal protein S27a g1: Receptor of activated protein C kinase 1 C1: 40S ribosomal protein S2 G1: 40S ribosomal protein S6 J1: 40S ribosomal protein S9 M1: 40S ribosomal protein S12 N1: 40S ribosomal protein S13 O1: 40S ribosomal protein S14 W1: 40S ribosomal protein S15a Y1: 40S ribosomal protein S24 Z1: 40S ribosomal protein S25 b1: 40S ribosomal protein S27 e1: 40S ribosomal protein S30 i1: Human 18S ribosomal RNA A1: 40S ribosomal protein SA B1: 40S ribosomal protein S3a D1: 40S ribosomal protein S3 E1: 40S ribosomal protein S4, X isoform F1: 40S ribosomal protein S5 H1: 40S ribosomal protein S7 I1: 40S ribosomal protein S8 K1: 40S ribosomal protein S10 L1: 40S ribosomal protein S11 P1: 40S ribosomal protein S15 Q1: 40S ribosomal protein S16 R1: 40S ribosomal protein S17 S1: 40S ribosomal protein S18 j1: 60S ribosomal protein L41 T2: 40S ribosomal protein S19 U2: 40S ribosomal protein S20 V2: 40S ribosomal protein S21 X2: 40S ribosomal protein S23 a2: 40S ribosomal protein S26 c2: 40S ribosomal protein S28 d2: 40S ribosomal protein S29 f2: Ribosomal protein S27a g2: Receptor of activated protein C kinase 1 C2: 40S ribosomal protein S2 G2: 40S ribosomal protein S6 J2: 40S ribosomal protein S9 M2: 40S ribosomal protein S12 N2: 40S ribosomal protein S13 O2: 40S ribosomal protein S14 W2: 40S ribosomal protein S15a Y2: 40S ribosomal protein S24 Z2: 40S ribosomal protein S25 b2: 40S ribosomal protein S27 e2: 40S ribosomal protein S30 i2: Human 18S ribosomal RNA A2: 40S ribosomal protein SA B2: 40S ribosomal protein S3a D2: 40S ribosomal protein S3 E2: 40S ribosomal protein S4, X isoform F2: 40S ribosomal protein S5 H2: 40S ribosomal protein S7 I2: 40S ribosomal protein S8 K2: 40S ribosomal protein S10 L2: 40S ribosomal protein S11 P2: 40S ribosomal protein S15 Q2: 40S ribosomal protein S16 R2: 40S ribosomal protein S17 S2: 40S ribosomal protein S18 j2: 60S ribosomal protein L41 T3: 40S ribosomal protein S19 U3: 40S ribosomal protein S20 V3: 40S ribosomal protein S21 X3: 40S ribosomal protein S23 a3: 40S ribosomal protein S26 c3: 40S ribosomal protein S28 d3: 40S ribosomal protein S29 f3: Ribosomal protein S27a g3: Receptor of activated protein C kinase 1 C3: 40S ribosomal protein S2 G3: 40S ribosomal protein S6 J3: 40S ribosomal protein S9 M3: 40S ribosomal protein S12 N3: 40S ribosomal protein S13 O3: 40S ribosomal protein S14 W3: 40S ribosomal protein S15a Y3: 40S ribosomal protein S24 Z3: 40S ribosomal protein S25 b3: 40S ribosomal protein S27 e3: 40S ribosomal protein S30 i3: Human 18S ribosomal RNA A3: 40S ribosomal protein SA B3: 40S ribosomal protein S3a D3: 40S ribosomal protein S3 E3: 40S ribosomal protein S4, X isoform F3: 40S ribosomal protein S5 H3: 40S ribosomal protein S7 I3: 40S ribosomal protein S8 K3: 40S ribosomal protein S10 L3: 40S ribosomal protein S11 P3: 40S ribosomal protein S15 Q3: 40S ribosomal protein S16 R3: 40S ribosomal protein S17 S3: 40S ribosomal protein S18 j3: 60S ribosomal protein L41 T4: 40S ribosomal protein S19 U4: 40S ribosomal protein S20 V4: 40S ribosomal protein S21 X4: 40S ribosomal protein S23 a4: 40S ribosomal protein S26 c4: 40S ribosomal protein S28 d4: 40S ribosomal protein S29 f4: Ribosomal protein S27a g4: Receptor of activated protein C kinase 1 C4: 40S ribosomal protein S2 G4: 40S ribosomal protein S6 J4: 40S ribosomal protein S9 M4: 40S ribosomal protein S12 N4: 40S ribosomal protein S13 O4: 40S ribosomal protein S14 W4: 40S ribosomal protein S15a Y4: 40S ribosomal protein S24 Z4: 40S ribosomal protein S25 b4: 40S ribosomal protein S27 e4: 40S ribosomal protein S30 i4: Human 18S ribosomal RNA A4: 40S ribosomal protein SA B4: 40S ribosomal protein S3a D4: 40S ribosomal protein S3 E4: 40S ribosomal protein S4, X isoform F4: 40S ribosomal protein S5 H4: 40S ribosomal protein S7 I4: 40S ribosomal protein S8 K4: 40S ribosomal protein S10 L4: 40S ribosomal protein S11 P4: 40S ribosomal protein S15 Q4: 40S ribosomal protein S16 R4: 40S ribosomal protein S17 S4: 40S ribosomal protein S18 j4: 60S ribosomal protein L41 T5: 40S ribosomal protein S19 U5: 40S ribosomal protein S20 V5: 40S ribosomal protein S21 X5: 40S ribosomal protein S23 a5: 40S ribosomal protein S26 c5: 40S ribosomal protein S28 d5: 40S ribosomal protein S29 f5: Ribosomal protein S27a g5: Receptor of activated protein C kinase 1 C5: 40S ribosomal protein S2 G5: 40S ribosomal protein S6 J5: 40S ribosomal protein S9 M5: 40S ribosomal protein S12 N5: 40S ribosomal protein S13 O5: 40S ribosomal protein S14 W5: 40S ribosomal protein S15a Y5: 40S ribosomal protein S24 Z5: 40S ribosomal protein S25 b5: 40S ribosomal protein S27 e5: 40S ribosomal protein S30 i5: Human 18S ribosomal RNA A5: 40S ribosomal protein SA B5: 40S ribosomal protein S3a D5: 40S ribosomal protein S3 E5: 40S ribosomal protein S4, X isoform F5: 40S ribosomal protein S5 H5: 40S ribosomal protein S7 I5: 40S ribosomal protein S8 K5: 40S ribosomal protein S10 L5: 40S ribosomal protein S11 P5: 40S ribosomal protein S15 Q5: 40S ribosomal protein S16 R5: 40S ribosomal protein S17 S5: 40S ribosomal protein S18 j5: 60S ribosomal protein L41 T6: 40S ribosomal protein S19 U6: 40S ribosomal protein S20 V6: 40S ribosomal protein S21 X6: 40S ribosomal protein S23 a6: 40S ribosomal protein S26 c6: 40S ribosomal protein S28 d6: 40S ribosomal protein S29 f6: Ribosomal protein S27a g6: Receptor of activated protein C kinase 1 C6: 40S ribosomal protein S2 G6: 40S ribosomal protein S6 J6: 40S ribosomal protein S9 M6: 40S ribosomal protein S12 N6: 40S ribosomal protein S13 O6: 40S ribosomal protein S14 W6: 40S ribosomal protein S15a Y6: 40S ribosomal protein S24 Z6: 40S ribosomal protein S25 b6: 40S ribosomal protein S27 e6: 40S ribosomal protein S30 i6: Human 18S ribosomal RNA A6: 40S ribosomal protein SA B6: 40S ribosomal protein S3a D6: 40S ribosomal protein S3 E6: 40S ribosomal protein S4, X isoform F6: 40S ribosomal protein S5 H6: 40S ribosomal protein S7 I6: 40S ribosomal protein S8 K6: 40S ribosomal protein S10 L6: 40S ribosomal protein S11 P6: 40S ribosomal protein S15 Q6: 40S ribosomal protein S16 R6: 40S ribosomal protein S17 S6: 40S ribosomal protein S18 j6: 60S ribosomal protein L41 k1: Malignant T-cell-amplified sequence 1 k2: Malignant T-cell-amplified sequence 1 k3: Malignant T-cell-amplified sequence 1 k4: Malignant T-cell-amplified sequence 1 k5: Malignant T-cell-amplified sequence 1 k6: Malignant T-cell-amplified sequence 1 l1: Density-regulated protein l2: Density-regulated protein l3: Density-regulated protein l4: Density-regulated protein l5: Density-regulated protein l6: Density-regulated protein ヘテロ分子
T1: 40S ribosomal protein S19 U1: 40S ribosomal protein S20 V1: 40S ribosomal protein S21 X1: 40S ribosomal protein S23 a1: 40S ribosomal protein S26 c1: 40S ribosomal protein S28 d1: 40S ribosomal protein S29 f1: Ribosomal protein S27a g1: Receptor of activated protein C kinase 1 C1: 40S ribosomal protein S2 G1: 40S ribosomal protein S6 J1: 40S ribosomal protein S9 M1: 40S ribosomal protein S12 N1: 40S ribosomal protein S13 O1: 40S ribosomal protein S14 W1: 40S ribosomal protein S15a Y1: 40S ribosomal protein S24 Z1: 40S ribosomal protein S25 b1: 40S ribosomal protein S27 e1: 40S ribosomal protein S30 i1: Human 18S ribosomal RNA A1: 40S ribosomal protein SA B1: 40S ribosomal protein S3a D1: 40S ribosomal protein S3 E1: 40S ribosomal protein S4, X isoform F1: 40S ribosomal protein S5 H1: 40S ribosomal protein S7 I1: 40S ribosomal protein S8 K1: 40S ribosomal protein S10 L1: 40S ribosomal protein S11 P1: 40S ribosomal protein S15 Q1: 40S ribosomal protein S16 R1: 40S ribosomal protein S17 S1: 40S ribosomal protein S18 j1: 60S ribosomal protein L41 k1: Malignant T-cell-amplified sequence 1 l1: Density-regulated protein ヘテロ分子
T2: 40S ribosomal protein S19 U2: 40S ribosomal protein S20 V2: 40S ribosomal protein S21 X2: 40S ribosomal protein S23 a2: 40S ribosomal protein S26 c2: 40S ribosomal protein S28 d2: 40S ribosomal protein S29 f2: Ribosomal protein S27a g2: Receptor of activated protein C kinase 1 C2: 40S ribosomal protein S2 G2: 40S ribosomal protein S6 J2: 40S ribosomal protein S9 M2: 40S ribosomal protein S12 N2: 40S ribosomal protein S13 O2: 40S ribosomal protein S14 W2: 40S ribosomal protein S15a Y2: 40S ribosomal protein S24 Z2: 40S ribosomal protein S25 b2: 40S ribosomal protein S27 e2: 40S ribosomal protein S30 i2: Human 18S ribosomal RNA A2: 40S ribosomal protein SA B2: 40S ribosomal protein S3a D2: 40S ribosomal protein S3 E2: 40S ribosomal protein S4, X isoform F2: 40S ribosomal protein S5 H2: 40S ribosomal protein S7 I2: 40S ribosomal protein S8 K2: 40S ribosomal protein S10 L2: 40S ribosomal protein S11 P2: 40S ribosomal protein S15 Q2: 40S ribosomal protein S16 R2: 40S ribosomal protein S17 S2: 40S ribosomal protein S18 j2: 60S ribosomal protein L41 k2: Malignant T-cell-amplified sequence 1 l2: Density-regulated protein ヘテロ分子
T3: 40S ribosomal protein S19 U3: 40S ribosomal protein S20 V3: 40S ribosomal protein S21 X3: 40S ribosomal protein S23 a3: 40S ribosomal protein S26 c3: 40S ribosomal protein S28 d3: 40S ribosomal protein S29 f3: Ribosomal protein S27a g3: Receptor of activated protein C kinase 1 C3: 40S ribosomal protein S2 G3: 40S ribosomal protein S6 J3: 40S ribosomal protein S9 M3: 40S ribosomal protein S12 N3: 40S ribosomal protein S13 O3: 40S ribosomal protein S14 W3: 40S ribosomal protein S15a Y3: 40S ribosomal protein S24 Z3: 40S ribosomal protein S25 b3: 40S ribosomal protein S27 e3: 40S ribosomal protein S30 i3: Human 18S ribosomal RNA A3: 40S ribosomal protein SA B3: 40S ribosomal protein S3a D3: 40S ribosomal protein S3 E3: 40S ribosomal protein S4, X isoform F3: 40S ribosomal protein S5 H3: 40S ribosomal protein S7 I3: 40S ribosomal protein S8 K3: 40S ribosomal protein S10 L3: 40S ribosomal protein S11 P3: 40S ribosomal protein S15 Q3: 40S ribosomal protein S16 R3: 40S ribosomal protein S17 S3: 40S ribosomal protein S18 j3: 60S ribosomal protein L41 k3: Malignant T-cell-amplified sequence 1 l3: Density-regulated protein ヘテロ分子
T4: 40S ribosomal protein S19 U4: 40S ribosomal protein S20 V4: 40S ribosomal protein S21 X4: 40S ribosomal protein S23 a4: 40S ribosomal protein S26 c4: 40S ribosomal protein S28 d4: 40S ribosomal protein S29 f4: Ribosomal protein S27a g4: Receptor of activated protein C kinase 1 C4: 40S ribosomal protein S2 G4: 40S ribosomal protein S6 J4: 40S ribosomal protein S9 M4: 40S ribosomal protein S12 N4: 40S ribosomal protein S13 O4: 40S ribosomal protein S14 W4: 40S ribosomal protein S15a Y4: 40S ribosomal protein S24 Z4: 40S ribosomal protein S25 b4: 40S ribosomal protein S27 e4: 40S ribosomal protein S30 i4: Human 18S ribosomal RNA A4: 40S ribosomal protein SA B4: 40S ribosomal protein S3a D4: 40S ribosomal protein S3 E4: 40S ribosomal protein S4, X isoform F4: 40S ribosomal protein S5 H4: 40S ribosomal protein S7 I4: 40S ribosomal protein S8 K4: 40S ribosomal protein S10 L4: 40S ribosomal protein S11 P4: 40S ribosomal protein S15 Q4: 40S ribosomal protein S16 R4: 40S ribosomal protein S17 S4: 40S ribosomal protein S18 j4: 60S ribosomal protein L41 k4: Malignant T-cell-amplified sequence 1 l4: Density-regulated protein ヘテロ分子
T5: 40S ribosomal protein S19 U5: 40S ribosomal protein S20 V5: 40S ribosomal protein S21 X5: 40S ribosomal protein S23 a5: 40S ribosomal protein S26 c5: 40S ribosomal protein S28 d5: 40S ribosomal protein S29 f5: Ribosomal protein S27a g5: Receptor of activated protein C kinase 1 C5: 40S ribosomal protein S2 G5: 40S ribosomal protein S6 J5: 40S ribosomal protein S9 M5: 40S ribosomal protein S12 N5: 40S ribosomal protein S13 O5: 40S ribosomal protein S14 W5: 40S ribosomal protein S15a Y5: 40S ribosomal protein S24 Z5: 40S ribosomal protein S25 b5: 40S ribosomal protein S27 e5: 40S ribosomal protein S30 i5: Human 18S ribosomal RNA A5: 40S ribosomal protein SA B5: 40S ribosomal protein S3a D5: 40S ribosomal protein S3 E5: 40S ribosomal protein S4, X isoform F5: 40S ribosomal protein S5 H5: 40S ribosomal protein S7 I5: 40S ribosomal protein S8 K5: 40S ribosomal protein S10 L5: 40S ribosomal protein S11 P5: 40S ribosomal protein S15 Q5: 40S ribosomal protein S16 R5: 40S ribosomal protein S17 S5: 40S ribosomal protein S18 j5: 60S ribosomal protein L41 k5: Malignant T-cell-amplified sequence 1 l5: Density-regulated protein ヘテロ分子
T6: 40S ribosomal protein S19 U6: 40S ribosomal protein S20 V6: 40S ribosomal protein S21 X6: 40S ribosomal protein S23 a6: 40S ribosomal protein S26 c6: 40S ribosomal protein S28 d6: 40S ribosomal protein S29 f6: Ribosomal protein S27a g6: Receptor of activated protein C kinase 1 C6: 40S ribosomal protein S2 G6: 40S ribosomal protein S6 J6: 40S ribosomal protein S9 M6: 40S ribosomal protein S12 N6: 40S ribosomal protein S13 O6: 40S ribosomal protein S14 W6: 40S ribosomal protein S15a Y6: 40S ribosomal protein S24 Z6: 40S ribosomal protein S25 b6: 40S ribosomal protein S27 e6: 40S ribosomal protein S30 i6: Human 18S ribosomal RNA A6: 40S ribosomal protein SA B6: 40S ribosomal protein S3a D6: 40S ribosomal protein S3 E6: 40S ribosomal protein S4, X isoform F6: 40S ribosomal protein S5 H6: 40S ribosomal protein S7 I6: 40S ribosomal protein S8 K6: 40S ribosomal protein S10 L6: 40S ribosomal protein S11 P6: 40S ribosomal protein S15 Q6: 40S ribosomal protein S16 R6: 40S ribosomal protein S17 S6: 40S ribosomal protein S18 j6: 60S ribosomal protein L41 k6: Malignant T-cell-amplified sequence 1 l6: Density-regulated protein ヘテロ分子
分子量: 17944.008 Da / 分子数: 6 / 由来タイプ: 天然 / 由来: (天然) Homo sapiens (ヒト) / 参照: UniProt: Q5RKT7
#9: タンパク質
ReceptorofactivatedproteinCkinase1 / Cell proliferation-inducing gene 21 protein / Guanine nucleotide-binding protein subunit beta-2- ...Cell proliferation-inducing gene 21 protein / Guanine nucleotide-binding protein subunit beta-2-like 1 / Guanine nucleotide-binding protein subunit beta-like protein 12.3 / Human lung cancer oncogene 7 protein / HLC-7 / Receptor for activated C kinase / Small ribosomal subunit protein RACK1
分子量: 35115.652 Da / 分子数: 6 / 由来タイプ: 天然 / 由来: (天然) Homo sapiens (ヒト) / 参照: UniProt: P63244
Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 30
解像度 (Å)
Rfactor Rfree
Num. reflection Rfree
Rfactor Rwork
Num. reflection Rwork
Num. reflection all
% reflection obs (%)
6-6.0682
0.3829
494
0.3901
8414
8908
95
6.0682-6.1396
0.4055
440
0.3922
8483
8923
95
6.1396-6.2144
0.3731
405
0.3873
9009
9414
99
6.2144-6.2931
0.3884
449
0.3916
8922
9371
100
6.2931-6.3759
0.3943
470
0.3974
8889
9359
100
6.3759-6.4632
0.4194
464
0.4026
9037
9501
100
6.4632-6.5556
0.3899
443
0.3964
8974
9417
100
6.5556-6.6534
0.3858
505
0.3908
8887
9392
100
6.6534-6.7574
0.3938
472
0.3921
8927
9399
100
6.7574-6.8681
0.4137
484
0.3919
8985
9469
100
6.8681-6.9865
0.3569
448
0.3911
8999
9447
100
6.9865-7.1136
0.3951
512
0.3837
8940
9452
100
7.1136-7.2504
0.3737
459
0.3809
8948
9407
100
7.2504-7.3983
0.3833
537
0.3842
8851
9388
100
7.3983-7.5592
0.3729
534
0.3856
8937
9471
100
7.5592-7.735
0.3638
506
0.3775
8873
9379
100
7.735-7.9284
0.3544
446
0.3755
9006
9452
100
7.9284-8.1427
0.3457
507
0.375
8790
9297
98
8.1427-8.3822
0.3765
595
0.3706
8829
9424
100
8.3822-8.6527
0.3788
487
0.3571
8942
9429
100
8.6527-8.9619
0.3827
403
0.3568
9036
9439
100
8.9619-9.3205
0.3501
486
0.352
8974
9460
100
9.3205-9.7445
0.3362
590
0.3356
8839
9429
100
9.7445-10.258
0.3512
476
0.318
8997
9473
100
10.258-10.9003
0.2926
470
0.2987
8979
9449
100
10.9003-11.7412
0.2789
435
0.2926
8995
9430
100
11.7412-12.9214
0.2771
416
0.2921
8973
9389
98
12.9214-14.788
0.3104
441
0.3016
8983
9424
100
14.788-18.6191
0.276
542
0.2857
8950
9492
99
18.6191-116.9536
0.239
516
0.2306
8873
9389
98
精密化 TLS
手法: refined / Refine-ID: X-RAY DIFFRACTION
ID
L11 (°2)
L12 (°2)
L13 (°2)
L22 (°2)
L23 (°2)
L33 (°2)
S11 (Å °)
S12 (Å °)
S13 (Å °)
S21 (Å °)
S22 (Å °)
S23 (Å °)
S31 (Å °)
S32 (Å °)
S33 (Å °)
T11 (Å2)
T12 (Å2)
T13 (Å2)
T22 (Å2)
T23 (Å2)
T33 (Å2)
Origin x (Å)
Origin y (Å)
Origin z (Å)
1
1.115
0.5074
-0.0148
1.3825
-0.4335
0.6569
-0.263
-0.1445
-0.1956
-0.3968
0.2687
-0.275
-0.0696
0.0745
-0.0032
1.7821
-0.136
0.1558
2.0088
-0.1638
1.6392
-13.7523
106.2804
-93.3711
2
0.0604
-0.1403
0.193
0.2924
-0.4013
0.5611
-0.1414
-0.502
-1.4836
0.58
0.6132
0.6863
1.6142
-0.3396
-0.1556
4.4685
0.7859
1.4335
5.1177
0.7943
3.8352
-145.7362
69.45
45.297
3
0.2022
0.0485
0.1178
0.0952
-0.0113
0.076
-0.3876
0.052
0.314
-0.9489
-0.2137
0.774
0.1811
-0.8868
0.0048
2.5928
0.8902
0.8255
5.6017
0.215
3.8295
-156.4495
111.8634
10.6954
4
0.6717
0.9714
-0.516
2.2752
-0.5779
0.4285
-0.6849
1.5537
-0.9839
-2.2208
0.1852
-0.8687
0.4997
0.8781
0.1797
2.7761
0.744
0.1883
5.5566
0.8124
3.4423
-93.9373
114.151
-85.0524
5
0.0134
0.0093
-0.0174
0.0037
-0.0096
0.0162
-0.0731
0.055
-0.3546
-1.0062
0.4465
0.3666
0.3976
0.1603
0.004
5.0382
0.9959
-0.3812
4.3089
-0.4393
5.6732
-110.0028
42.9121
-36.9007
6
0.2095
-0.6535
-0.5434
0.752
0.503
1.3524
0.6147
-0.2246
1.2831
0.604
0.4284
-0.2196
-1.0346
-0.3117
3.0076
2.8137
0.1125
-0.0432
2.0762
0.0008
1.8013
-73.0565
118.3228
4.8969
7
1.1165
-0.657
-0.4643
1.0743
0.3097
0.6849
-0.099
-0.0618
-0.4366
0.3382
-0.015
0.4284
0.1133
-0.3251
0.3229
1.3798
-0.3034
-0.001
1.5906
-0.0842
1.371
-77.4754
81.6515
-19.6031
8
0.6174
-0.063
-0.0173
1.4923
0.1246
1.0156
-0.0278
-0.1887
-0.1417
0.0421
0.2154
0.1746
-0.2318
0.3788
0.0339
1.6842
0.0937
0.1785
2.0417
0.0453
1.5694
-78.4791
227.9507
16.716
9
0.2678
-0.1575
-0.1268
0.195
0.1321
0.0844
0.1259
-0.1148
0.6357
-1.0483
0.6407
-0.4056
-1.0363
0.3348
0.0005
3.9673
-0.1466
0.0041
3.2782
0.0638
2.3317
-23.9192
261.2691
-166.5969
10
0.8191
0.0894
-0.6276
0.2393
-0.3841
0.9104
0.2873
0.8213
-0.2496
-0.2754
-0.2049
0.8367
0.0548
-0.2459
0.6403
3.398
-1.1367
0.253
4.5196
-1.8981
3.379
-57.8094
220.1787
-159.0307
11
0.0085
-0.0081
-0.0021
0.0006
0.0316
0.2877
0.7166
-0.8035
-0.0899
1.621
1.0204
1.83
-0.7685
-0.6218
0.0542
3.9837
-1.1901
0.5214
3.8778
-0.1402
3.5941
-111.723
218.505
-56.9361
12
0.4238
-0.0372
0.0753
0.3609
0.0465
0.0226
0.141
-0.0212
0.4021
0.2286
0.7496
1.2611
-0.3145
-0.3637
-0.0994
5.774
0.7541
-1.6825
5.1635
-0.3343
3.7777
-78.6485
289.5396
-93.1786
13
0.6586
0.0119
-0.5893
0.4134
0.2572
0.2523
-0.989
0.4038
-0.5499
-0.1683
-0.2983
-0.3814
0.9306
-0.2172
-3.5217
2.07
0.0364
0.4148
2.2144
-0.075
2.5407
-21.7394
215.9714
-84.3801
14
0.431
0.1405
-0.036
1.0559
0.5696
0.9918
-0.0395
0.2147
-0.0195
-0.5502
0.0053
-0.0637
-0.2569
-0.0353
-0.2429
1.3712
0.2318
-0.0009
1.4966
0.008
1.4576
-46.3524
251.8979
-76.1091
15
0.6281
0.3163
0.1862
0.5055
0.4044
1.2581
-0.2305
-0.3267
0.5491
-0.2073
-0.0987
0.1196
-0.6864
-0.133
-0.2357
2.8005
-0.3388
-0.4545
2.9081
-0.339
2.5764
83.684
115.0653
130.7295
16
2.2959
0.3254
1.777
0.2682
0.3631
1.4161
0.1529
0.7747
-2.0744
-0.8288
0.4631
0.2352
1.632
0.3427
0.0275
4.9847
-1.5987
1.1014
4.042
-0.6392
3.0561
37.7658
88.3793
-56.218
17
0.0791
-0.0058
-0.0889
0.0264
0.0126
0.0896
0.8082
1.3321
-0.3336
-1.3315
-0.3208
0.3137
-0.5224
-0.1354
0.0158
2.4572
0.3221
-0.2858
3.9308
0.8991
3.0895
65.8975
134.1164
-45.8545
18
0.3297
-0.3463
0.0458
0.3695
-0.0537
0.0145
0.0373
0.0106
0.4675
0.48
0.4241
-1.2033
-0.0478
-0.1345
0.2804
4.2836
-2.4284
-0.1863
4.6237
0.494
4.8237
115.3523
136.5456
58.9924
19
0.3603
0.1068
-0.1026
0.2431
-0.0141
0.0307
0.5773
0.0242
-0.5069
0.5107
0.5522
-0.8468
0.6602
0.6997
0.0025
4.8144
0.2097
1.6056
6.3645
0.4292
5.3634
96.2383
66.77
16.9271
20
1.3809
-0.4316
1.5
0.9953
-0.6159
1.3503
0.0783
-0.0505
0.0421
0.5442
0.8472
0.8217
-2.2615
-0.6121
1.1351
1.8272
-0.0664
-0.1916
1.6353
-0.0387
3.0346
27.613
128.0953
28.4745
21
0.6276
-0.0487
0.193
0.9189
-0.3218
1.1745
-0.0677
0.1947
0.0873
-0.1167
0.016
-0.0958
0.3112
0.4303
-0.2925
1.3721
-0.1292
-0.0246
1.671
-0.1343
1.8439
55.9712
95.1448
35.3624
22
1.1693
-0.4299
0.2582
1.0646
-0.0317
1.1228
0.4718
0.725
-1.1864
-0.3503
-0.1527
-0.2205
0.5752
0.4875
0.4571
2.5079
0.9657
-0.1672
3.5571
-0.0824
3.7277
163.7639
215.1853
-6.6138
23
0.181
0.2044
0.4551
0.233
0.5161
1.1462
0.7084
0.2486
1.0371
0.2162
0.8997
0.5241
0.4949
1.7962
0.0891
2.8597
-0.7724
0.5296
5.5527
-0.216
3.3352
-22.0636
249.3906
39.3496
24
0.0027
-0.0182
0.0096
0.0863
-0.0694
0.0607
0.3171
-0.3059
0.0357
1.2292
0.5822
1.2934
0.4717
0.5928
0.0053
2.7405
-0.843
-0.2024
3.6128
-0.3413
2.9129
1.0903
206.7614
63.2916
25
0.7587
-0.1203
-0.3913
0.0153
0.0614
0.2018
-0.1675
0.3403
0.6415
0.0637
-0.3309
-1.6176
0.6248
0.5089
0.1733
4.399
0.9783
-0.4622
4.5296
2.0857
3.8006
116.5112
200.7878
58.6089
26
0.0098
0.0071
-0.015
0.0066
-0.0192
0.0418
0.1549
-0.0672
-0.1468
0.1328
0.1168
-0.5852
0.0625
0.2954
0.0005
5.7851
-0.438
-0.0877
5.827
-1.1762
4.9266
68.6763
270.5593
56.0761
27
0.7818
0.3104
0.7728
0.086
0.1451
0.6812
-0.9179
0.7346
-1.1362
-0.8962
0.566
-0.124
0.1976
-0.5156
0.7739
1.8726
0.4361
-0.0757
1.592
-0.3311
3.1918
47.2636
205.9186
-5.3037
28
1.6017
0.7392
-0.2821
1.1372
-0.2899
0.7152
0.3218
-0.4542
0.0396
0.205
-0.1591
0.0307
-0.0161
-0.0726
0.6296
1.6122
0.2505
-0.2321
1.6524
-0.0628
1.4675
68.1813
240.0032
14.2593
29
0.7455
0.0499
-0.1458
1.114
0.1216
0.5437
-0.0812
0.1426
0.0134
-0.3601
0.2735
0.169
-0.1079
-0.0745
0.1752
2.5344
0.34
0.0135
1.8325
-0.1089
1.8518
21.3073
235.3817
-204.1144
30
-0
-0.0018
-0.001
0.0467
-0.0319
0.0197
0.0433
0.321
0.3541
0.1505
0.021
-0.0146
-0.1472
-0.1609
-0.2167
3.4628
1.8374
-1.0739
4.86
-1.219
5.1331
159.1009
238.2874
-67.3846
31
0.1284
-0.1809
-0.1353
0.2549
0.1937
0.1436
0.8291
-0.2554
0.251
0.5367
0.5966
-1.1773
-1.0211
0.7257
0.0352
4.1421
1.5721
-0.882
5.1374
0.1415
3.8436
159.0404
195.654
-102.2469
32
1.1584
0.146
-0.7267
0.0952
-0.2093
0.5933
0.9161
0.8145
0.4109
-0.687
-0.1851
-0.4317
-0.5839
-0.5916
1.3026
3.9946
0.9389
0.5032
4.1429
-1.7236
3.3722
97.8335
209.8374
-198.1698
33
0.0449
-0.0028
0.0129
-0.0006
-0.0008
0.0044
-0.4389
0.9174
0.483
-0.5977
0.2621
-0.3838
-0.4898
0.2593
-0.0015
4.0677
-0.6724
-0.152
5.665
0.5427
5.2552
129.6367
270.0784
-148.0186
34
1.5608
-1.5266
0.8886
1.9023
-0.2349
1.3755
-0.8433
-0.5866
-1.6388
1.6608
1.2228
0.4352
-0.6885
0.1315
1.5429
3.0273
0.2333
0.6374
2.2667
0.3443
2.2644
78.1227
207.1849
-105.9726
35
0.6289
-0.3216
0.2335
1.2821
-0.0921
0.8704
0.0093
-0.1077
0.207
0.109
0.0621
-0.5189
0.0748
0.6178
-1.4707
1.9353
0.2565
0.4628
1.826
-0.1511
1.6037
89.9236
242.3929
-130.2711
36
0.6711
0.2415
-0.1413
0.9028
0.2057
1.1011
-0.1917
0.0839
-0.043
-0.0638
0.1925
0.1371
0.0405
-0.0135
0.0001
1.8787
0.029
0.2703
1.8574
-0.1501
2.086
-157.5138
97.7774
101.9753
37
0.4347
-0.3021
-0.363
0.2223
0.2604
0.3089
0.464
0.126
-1.5299
0.5447
0.3332
-0.6757
0.8723
0.0864
0.3889
3.6957
0.0973
-0.9487
5.1866
-1.4738
4.3095
29.4533
90.1069
155.3081
38
0.0078
0.0015
-0.0183
-0.0023
0.0015
0.0558
-0.2535
0.1013
0.544
1.6025
-0.476
-0.8473
-0.6039
-0.0979
0.2635
3.1549
-1.1439
-0.0789
3.7579
-1.577
4.5722
1.0571
131.4353
175.1325
39
0.3424
-0.5037
0.5313
0.9811
-0.8359
0.8241
-0.0472
0.1102
-0.3149
-0.1514
0.7904
1.1308
-0.7328
-1.9916
0.3487
3.246
0.4654
0.7372
4.1411
-0.8337
2.9288
-113.905
121.7095
166.1033
40
-0.0003
0.0004
-0.0006
-0.0023
0.0003
-0.0001
0.0085
-0.3806
-0.1606
1.0548
0.4653
0.2954
0.803
-0.7474
0.01
4.3195
-0.0275
-0.6997
5.472
-0.1037
4.3611
-57.5686
57.716
167.5694
41
2.2779
1.0237
0.7543
1.0191
1.1928
1.185
-1.2337
0.7534
0.012
-0.7304
1.2064
-0.6637
-1.0519
1.1056
0.2329
2.6704
-0.2364
0.3471
2.0728
0.04
3.0857
-42.4463
122.7276
105.121
42
0.7628
0.2312
-0.0262
1.1554
0.2909
0.6196
0.108
-0.3799
-0.0322
0.3286
0.0095
-0.5711
0.0174
0.223
0.004
1.9402
0.0099
0.3114
1.6194
-0.0225
1.7543
-59.319
88.0365
125.9068
精密化 TLSグループ
ID
Refine-ID
Refine TLS-ID
Selection details
Auth asym-ID
Auth seq-ID
1
X-RAY DIFFRACTION
1
(chain 'T1' andresid2through144) or (chain 'U1' andresid16through119) or (chain 'c1' andresid5through68) or (chain 'd1' andresid4through56) or (chain 'g1' andresid2through314) or (chain 'M1' andresid10through132) or (chain 'Z1' andresid41through115) or (chain 'i1' andresid1210through1689) or (chain 'f1' andresid78through149) or (chain 'D1' andresid1through227) or (chain 'F1' andresid14through204) or (chain 'K1' andresid1through98) or (chain 'P1' andresid10through134) or (chain 'Q1' andresid1through146) or (chain 'R1' andresid1through69) or (chain 'S1'