Entry | Database: PDB / ID: 5vmd |
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Title | Crystal structure of UBR-box from UBR6 in a domain-swapping conformation |
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Components | F-box only protein 11 |
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Keywords | LIGASE / domain swapping / zinc finger / zinc / ubr-box / ubr6 / fbxo11 |
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Function / homology | Function and homology information
protein modification process => GO:0036211 / protein-arginine N-methyltransferase activity / post-translational protein modification / ubiquitin ligase complex / sensory perception of sound / protein polyubiquitination / ubiquitin-protein transferase activity / chromosome / Antigen processing: Ubiquitination & Proteasome degradation / Neddylation ...protein modification process => GO:0036211 / protein-arginine N-methyltransferase activity / post-translational protein modification / ubiquitin ligase complex / sensory perception of sound / protein polyubiquitination / ubiquitin-protein transferase activity / chromosome / Antigen processing: Ubiquitination & Proteasome degradation / Neddylation / ubiquitin-dependent protein catabolic process / regulation of apoptotic process / protein ubiquitination / nucleolus / zinc ion binding / nucleoplasm / nucleus / cytoplasm / cytosolSimilarity search - Function F-box only protein 11 / Right handed beta helix domain / Right handed beta helix region / Parallel beta-helix repeat-2 / Putative zinc finger in N-recognin (UBR box) / Periplasmic copper-binding protein NosD, beta helix domain / Periplasmic copper-binding protein (NosD) / Carbohydrate-binding/sugar hydrolysis domain / Domain present in carbohydrate binding proteins and sugar hydrolses / Zinc finger, UBR-type ...F-box only protein 11 / Right handed beta helix domain / Right handed beta helix region / Parallel beta-helix repeat-2 / Putative zinc finger in N-recognin (UBR box) / Periplasmic copper-binding protein NosD, beta helix domain / Periplasmic copper-binding protein (NosD) / Carbohydrate-binding/sugar hydrolysis domain / Domain present in carbohydrate binding proteins and sugar hydrolses / Zinc finger, UBR-type / Zinc finger UBR-type profile. / Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway / A Receptor for Ubiquitination Targets / F-box domain profile. / F-box-like domain superfamily / F-box-like / Parallel beta-helix repeat / Parallel beta-helix repeats / F-box domain / Pectin lyase fold / Pectin lyase fold/virulence factorSimilarity search - Domain/homology |
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Biological species | Homo sapiens (human) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.202 Å |
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Authors | Munoz-Escobar, J. / Kozlov, G. / Gehring, K. |
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Funding support | Canada, 1items Organization | Grant number | Country |
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Canadian Institutes of Health Research (CIHR) | | Canada |
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Citation | Journal: Protein Sci. / Year: 2017 Title: Crystal structure of the UBR-box from UBR6/FBXO11 reveals domain swapping mediated by zinc binding. Authors: Munoz-Escobar, J. / Kozlov, G. / Gehring, K. |
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History | Deposition | Apr 27, 2017 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Jul 12, 2017 | Provider: repository / Type: Initial release |
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Revision 1.1 | Jul 26, 2017 | Group: Author supporting evidence / Database references / Category: citation / pdbx_audit_support Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _pdbx_audit_support.funding_organization |
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Revision 1.2 | Aug 9, 2017 | Group: Database references / Category: citation / Item: _citation.title |
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Revision 1.3 | Oct 4, 2017 | Group: Database references / Category: citation Item: _citation.journal_volume / _citation.page_first / _citation.page_last |
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Revision 1.4 | Jan 8, 2020 | Group: Author supporting evidence / Category: pdbx_audit_support / Item: _pdbx_audit_support.funding_organization |
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Revision 1.5 | Mar 13, 2024 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_struct_conn_angle / struct_conn / struct_ncs_dom_lim Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr2_symmetry / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr1_symmetry / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn.ptnr2_symmetry / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id |
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