Entry Database : PDB / ID : 5u4l Structure visualization Downloads & linksTitle RTA-V1C7_G29R-high-salt ComponentsRicin V1C7 VHH antibody G29R variant DetailsKeywords HYDROLASE/IMMUNE SYSTEM / Ricin A chain / VHH antibody / HYDROLASE-IMMUNE SYSTEM complexFunction / homology Function and homology informationFunction Domain/homology Component
rRNA N-glycosylase / rRNA N-glycosylase activity / AMP binding / defense response / toxin activity / carbohydrate binding / killing of cells of another organism / negative regulation of translation Similarity search - Function Ricin (A Subunit), domain 2 / Ricin (A Subunit), domain 2 / Ricin (A subunit); domain 1 / Ricin (A subunit), domain 1 / Ribosome-inactivating protein conserved site / Shiga/ricin ribosomal inactivating toxins active site signature. / Ricin-type beta-trefoil lectin domain / Ribosome-inactivating protein type 1/2 / Ribosome-inactivating protein / Ribosome-inactivating protein, subdomain 1 ... Ricin (A Subunit), domain 2 / Ricin (A Subunit), domain 2 / Ricin (A subunit); domain 1 / Ricin (A subunit), domain 1 / Ribosome-inactivating protein conserved site / Shiga/ricin ribosomal inactivating toxins active site signature. / Ricin-type beta-trefoil lectin domain / Ribosome-inactivating protein type 1/2 / Ribosome-inactivating protein / Ribosome-inactivating protein, subdomain 1 / Ribosome-inactivating protein, subdomain 2 / Ribosome-inactivating protein superfamily / Ribosome inactivating protein / Ricin-type beta-trefoil / Lectin domain of ricin B chain profile. / Ricin B, lectin domain / Ricin B-like lectins / Few Secondary Structures / Irregular / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homologyBiological species Ricinus communis (castor bean)Vicugna pacos (alpaca)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 2.5 Å DetailsAuthors Rudolph, M.J. / Mantis, N. Funding support United States, 1items Details Hide detailsOrganization Grant number Country National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) HHSN272201400021C United States
CitationJournal : Proteins / Year : 2017Title : Using homology modeling to interrogate binding affinity in neutralization of ricin toxin by a family of single domain antibodies.Authors : Bazzoli, A. / Vance, D.J. / Rudolph, M.J. / Rong, Y. / Angalakurthi, S.K. / Toth 4th., R.T. / Middaugh, C.R. / Volkin, D.B. / Weis, D.D. / Karanicolas, J. / Mantis, N.J. History Deposition Dec 5, 2016 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Dec 13, 2017 Provider : repository / Type : Initial releaseRevision 1.1 Jan 17, 2018 Group : Author supporting evidence / Category : pdbx_audit_supportItem : _pdbx_audit_support.country / _pdbx_audit_support.funding_organizationRevision 1.2 Dec 26, 2018 Group : Data collection / Database references / Category : citation / citation_authorItem : _citation.country / _citation.journal_abbrev ... _citation.country / _citation.journal_abbrev / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year Revision 1.3 Dec 11, 2019 Group : Author supporting evidence / Category : pdbx_audit_support / Item : _pdbx_audit_support.funding_organizationRevision 1.4 Oct 4, 2023 Group : Data collection / Database references / Refinement descriptionCategory : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession
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