Entry | Database: PDB / ID: 5trd |
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Title | Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator |
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Components | - DNA (5'-D(*AP*TP*TP*AP*CP*TP*AP*AP*TP*TP*CP*AP*CP*GP*AP*GP*TP*AP*A)-3')
- DNA (5'-D(P*TP*TP*TP*AP*CP*TP*CP*GP*TP*GP*AP*AP*TP*TP*AP*GP*TP*AP*A)-3')
- Riboflavin kinase
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Keywords | TRANSFERASE/DNA / ribflavin kinase / MarR type regulatory domain / winged-helix-turn-helix domain / TRANSFERASE-DNA complex |
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Function / homology | Function and homology information
CTP-dependent riboflavin kinase / riboflavin kinase activity / FMN biosynthetic process / riboflavin biosynthetic process / phosphorylation / nucleotide binding / regulation of DNA-templated transcription / DNA binding / metal ion bindingSimilarity search - Function Riboflavin kinase domain, CTP-dependent / Riboflavin kinase, CTP-dependent / Domain of unknown function DUF120 / Riboflavin kinase-like / Riboflavin kinase domain superfamily / Crp-like helix-turn-helix domain / Crp-type HTH domain / Elongation Factor Tu (Ef-tu); domain 3 / Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain / Arc Repressor Mutant, subunit A ...Riboflavin kinase domain, CTP-dependent / Riboflavin kinase, CTP-dependent / Domain of unknown function DUF120 / Riboflavin kinase-like / Riboflavin kinase domain superfamily / Crp-like helix-turn-helix domain / Crp-type HTH domain / Elongation Factor Tu (Ef-tu); domain 3 / Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain / Arc Repressor Mutant, subunit A / Winged helix DNA-binding domain superfamily / Winged helix-like DNA-binding domain superfamily / Beta Barrel / Orthogonal Bundle / Mainly Beta / Mainly AlphaSimilarity search - Domain/homology |
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Biological species | ![](img/tx_archaea.gif) Thermoplasma acidophilum (acidophilic) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.85 Å |
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Authors | Vetting, M.W. / Rodionova, I.A. / Li, X. / Osterman, A.L. / Rodionov, D.A. / Almo, S.C. |
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Citation | Journal: To be published Title: Structure of RbkR (Riboflavin Kinase) from Thermoplasma acidophilum determined in complex with CTP and its cognate DNA operator Authors: Vetting, M.W. / Rodionova, I.A. / Li, X. / Osterman, A.L. / Rodionov, D.A. / Almo, S.C. |
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History | Deposition | Oct 26, 2016 | Deposition site: RCSB / Processing site: RCSB |
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Revision 1.0 | Nov 23, 2016 | Provider: repository / Type: Initial release |
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Revision 1.1 | Oct 4, 2023 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_prerelease_seq / struct_conn Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_label_asym_id |
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