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Yorodumi- PDB-5tnc: REFINED CRYSTAL STRUCTURE OF TROPONIN C FROM TURKEY SKELETAL MUSC... -
+Open data
-Basic information
Entry | Database: PDB / ID: 5tnc | |||||||||
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Title | REFINED CRYSTAL STRUCTURE OF TROPONIN C FROM TURKEY SKELETAL MUSCLE AT 2.0 ANGSTROMS RESOLUTION | |||||||||
Components | TROPONIN-CTroponin C | |||||||||
Keywords | CONTRACTILE SYSTEM PROTEINS | |||||||||
Function / homology | Function and homology information | |||||||||
Biological species | Meleagris gallopavo (turkey) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 2 Å | |||||||||
Authors | Herzberg, O. / James, M.N.G. | |||||||||
Citation | Journal: J.Mol.Biol. / Year: 1988 Title: Refined crystal structure of troponin C from turkey skeletal muscle at 2.0 A resolution. Authors: Herzberg, O. / James, M.N. #1: Journal: Methods Enzymol. / Year: 1987 Title: Molecular Structure of Troponin C and its Implications for the Ca2+ Triggering of Muscle Contraction Authors: Herzberg, O. / Moult, J. / James, M.N.G. #2: Journal: Calcium-Binding Proteins in Health and Disease / Year: 1987 Title: Conformational Flexibility of Troponin C Authors: Herzberg, O. / Moult, J. / James, M.N.G. #3: Journal: Ciba Found.Symp. / Year: 1986 Title: Calcium Binding to Skeletal Muscle Troponin C and the Regulation of Muscle Contraction Authors: Herzberg, O. / Moult, J. / James, M.N.G. #4: Journal: FEBS Lett. / Year: 1986 Title: Crystallographic Determination of Lanthanide Ion Binding to Troponin C Authors: Herzberg, O. / James, M.N.G. #5: Journal: J.Biol.Chem. / Year: 1986 Title: A Model for the Ca2+-Induced Conformational Transition of Troponin C. A Trigger for Muscle Contraction Authors: Herzberg, O. / Moult, J. / James, M.N.G. #6: Journal: Biochemistry / Year: 1985 Title: Common Structural Framework of the Two Ca2+(Slash)Mg2+ Binding Loops of Troponin C and Other Ca2+ Binding Proteins Authors: Herzberg, O. / James, M.N.G. #7: Journal: Nature / Year: 1985 Title: Structure of the Calcium Regulatory Muscle Protein Troponin-C at 2.8 Angstroms Resolution Authors: Herzberg, O. / James, M.N.G. #8: Journal: J.Mol.Biol. / Year: 1984 Title: Crystallographic Data for Troponin C from Turkey Skeletal Muscle Authors: Herzberg, O. / Hayakawa, K. / James, M.N.G. #9: Journal: Acta Crystallogr.,Sect.A / Year: 1984 Title: The Crystal Structure of Troponin C from Turkey Skeletal Muscle at 2.8 Angstroms Resolution Authors: Herzberg, O. / James, M.N.G. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5tnc.cif.gz | 53.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5tnc.ent.gz | 34.2 KB | Display | PDB format |
PDBx/mmJSON format | 5tnc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tn/5tnc ftp://data.pdbj.org/pub/pdb/validation_reports/tn/5tnc | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: SEE REMARK 4. / 2: SEE REMARK 6. |
-Components
#1: Protein | Mass: 18320.209 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Meleagris gallopavo (turkey) / References: UniProt: P10246 | ||||||
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#2: Chemical | #3: Water | ChemComp-HOH / | Nonpolymer details | THE WATER MOLECULES ARE ARRANGED IN DESCENDING ORDER OF RELIABILITY WHERE RELIABILITY IS DEFINED BY ...THE WATER MOLECULES ARE ARRANGED IN DESCENDING | Sequence details | BASED ON AMINO ACID COMPOSITION AND THE ELECTRON DENSITY MAP, ALA 99 IN CHICKEN TNC WAS IDENTIFIED ...BASED ON AMINO ACID COMPOSITIO | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.13 Å3/Da / Density % sol: 42.12 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Method: unknown / PH range low: 5 / PH range high: 4.9 | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 2 Å / Num. obs: 8054 / Observed criterion σ(I): 2 / Rmerge(I) obs: 0.06 / Num. measured all: 10825 |
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-Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.155 / Highest resolution: 2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2 Å
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Refine LS restraints |
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Refinement | *PLUS Num. reflection obs: 8054 / σ(I): 2 / Highest resolution: 2 Å / Lowest resolution: 10 Å / Rfactor obs: 0.155 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |