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Open data
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Basic information
Entry | Database: PDB / ID: 5o34 | ||||||
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Title | ThnE from S.clavuligerus | ||||||
![]() | Enoyl-CoA hydratase carB homologue | ||||||
![]() | LYASE / Antibiotics / thienamycin biosynthesis | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Valegard, K. / Andersson, I. | ||||||
![]() | ![]() Title: Structure of ThnE from the thienamycin biosynthesis. Authors: Valegard, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 127.6 KB | Display | ![]() |
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PDB format | ![]() | 99 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 447.2 KB | Display | ![]() |
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Full document | ![]() | 451.1 KB | Display | |
Data in XML | ![]() | 21.3 KB | Display | |
Data in CIF | ![]() | 28.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2a7kS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 32332.582 Da / Num. of mol.: 3 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.81 Å3/Da / Density % sol: 67.68 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: 0.1M citric acid pH 5.5, 1.2M NaCl |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Nov 28, 2008 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9795 Å / Relative weight: 1 |
Reflection | Resolution: 2.45→44.02 Å / Num. obs: 71350 / % possible obs: 98.5 % / Redundancy: 3.4 % / Biso Wilson estimate: 65.83 Å2 / CC1/2: 0.998 / Rmerge(I) obs: 0.067 / Net I/σ(I): 13.36 |
Reflection shell | Resolution: 2.45→2.51 Å / Redundancy: 3.2 % / Rmerge(I) obs: 1.034 / Num. unique obs: 5065 / CC1/2: 0.49 / % possible all: 94.7 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2A7K Resolution: 2.45→44.02 Å / Cor.coef. Fo:Fc: 0.932 / Cor.coef. Fo:Fc free: 0.918 / Rfactor Rfree error: 0 / SU R Cruickshank DPI: 0.255 / Cross valid method: THROUGHOUT / σ(F): 0 / SU R Blow DPI: 0.252 / SU Rfree Blow DPI: 0.197 / SU Rfree Cruickshank DPI: 0.2
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Displacement parameters | Biso mean: 64.58 Å2
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Refine analyze | Luzzati coordinate error obs: 0.37 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: 1 / Resolution: 2.45→44.02 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.45→2.52 Å / Rfactor Rfree error: 0 / Total num. of bins used: 19
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