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- PDB-5m2d: CRYSTAL STRUCTURE 4Ac Endoglucanase-like protein from Acremonium ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5m2d | |||||||||
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Title | CRYSTAL STRUCTURE 4Ac Endoglucanase-like protein from Acremonium chrysogenum | |||||||||
![]() | Endoglucanase-like protein | |||||||||
![]() | HYDROLASE / Endoglucanase-like protein / ALPHA/BETA BARREL | |||||||||
Function / homology | ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Gabdulkhakov, A. / Tishchenko, S. | |||||||||
![]() | ![]() Title: CRYSTAL STRUCTURE 4Ac Endoglucanase-like protein from Acremonium chrysogenum Authors: Gabdulkhakov, A. / Tishchenko, S. / Lisov, A. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 96.2 KB | Display | ![]() |
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PDB format | ![]() | 76.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 441.5 KB | Display | ![]() |
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Full document | ![]() | 443.4 KB | Display | |
Data in XML | ![]() | 18.4 KB | Display | |
Data in CIF | ![]() | 25.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 25726.141 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Gene: ACRE_041060 / Production host: ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.05 Å3/Da / Density % sol: 39.93 % |
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Crystal grow | Temperature: 295 K / Method: vapor diffusion, hanging drop / pH: 4 / Details: 0.2 M Sodium malonate, 20% PEG 3350 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Oct 7, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9184 Å / Relative weight: 1 |
Reflection | Resolution: 2.09→42 Å / Num. obs: 23601 / % possible obs: 95.2 % / Redundancy: 3.67 % / Net I/σ(I): 7.15 |
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Processing
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Refinement | Resolution: 2.097→40.793 Å / SU ML: 0.22 / Cross valid method: FREE R-VALUE / σ(F): 0.17 / Phase error: 21.62
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.097→40.793 Å
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Refine LS restraints |
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LS refinement shell |
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