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Open data
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Basic information
Entry | Database: PDB / ID: 5ltd | ||||||
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Title | Phosphate-bound Pichia angusta Atg18 | ||||||
![]() | Autophagy-related protein 18 | ||||||
![]() | LIPID BINDING PROTEIN / membrane bound protein | ||||||
Function / homology | ![]() phagophore assembly site membrane / vacuolar membrane / autophagy / protein transport / endosome membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Scacioc, A. / Kuhnel, K. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Phopshate-bound Pichia angusta Atg18 Authors: Scacioc, A. / Kuhnel, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 138 KB | Display | ![]() |
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PDB format | ![]() | 103.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 462.3 KB | Display | ![]() |
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Full document | ![]() | 463.7 KB | Display | |
Data in XML | ![]() | 23.6 KB | Display | |
Data in CIF | ![]() | 32.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5ltgS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 58005.082 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Details: two phosphate ions bound as ligands to the protein / Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-PO4 / #3: Chemical | ChemComp-EDO / | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | Temperature: 293 K / Method: vapor diffusion Details: 20 % (w/V) PEG 8000, 0.2 M NaCl, 0.1 M sodium phosphate dibasic-citric acid pH 4.2 |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: PSI PILATUS 6M / Detector: PIXEL / Date: Mar 16, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→45 Å / Num. obs: 27376 / % possible obs: 98.3 % / Redundancy: 7.4 % / Rmerge(I) obs: 0.133 / Net I/σ(I): 12.8 |
Reflection shell | Rmerge(I) obs: 0.645 / % possible all: 96.5 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 5LTG Resolution: 2.5→45 Å / Cross valid method: FREE R-VALUE
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Refinement step | Cycle: LAST / Resolution: 2.5→45 Å
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