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Open data
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Basic information
Entry | Database: PDB / ID: 5ltg | ||||||
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Title | Citrate-bound Pichia angusta Atg18 | ||||||
![]() | Autophagy-related protein 18 | ||||||
![]() | LIPID BINDING PROTEIN / membrane binding protein | ||||||
Function / homology | ![]() phagophore assembly site membrane / vacuolar membrane / autophagy / protein transport / endosome membrane Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Scacioc, A. / Kuhnel, K. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Citrate-bound Pichia angusta Atg18 Authors: Scacioc, A. / Kuhnel, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 147.5 KB | Display | ![]() |
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PDB format | ![]() | 110.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 472.3 KB | Display | ![]() |
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Full document | ![]() | 478.8 KB | Display | |
Data in XML | ![]() | 28.6 KB | Display | |
Data in CIF | ![]() | 41.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4av8S S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 58005.082 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.76 Å3/Da / Density % sol: 30.3 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion Details: 20 % (w/V) PEG 8000, 0.2 M NaCl, 0.1 M sodium phosphate dibasic-citric acid pH 4.2 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Aug 18, 2013 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2→41.342 Å / Num. obs: 51797 / % possible obs: 94.5 % / Redundancy: 2 % / Rmerge(I) obs: 0.057 / Net I/σ(I): 9.6 |
Reflection shell | Resolution: 2→2.1 Å / Rmerge(I) obs: 0.361 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4AV8 Resolution: 2→41.342 Å / SU ML: 0.3 / Cross valid method: FREE R-VALUE / σ(F): 1.98 / Phase error: 30.17 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→41.342 Å
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Refine LS restraints |
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LS refinement shell |
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