- PDB-5kd6: Crystal structure of the aromatic prenyltransferase AtaPT from As... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 5kd6
Title
Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with dimethylallyl S-thiolodiphosphate and (-)-butyrolactone II
Components
aromatic prenyltransferase
Keywords
TRANSFERASE / substrate promiscuity / ABBA fold
Function / homology
Aromatic prenyltransferase DMATS-type, fungi / Aromatic prenyltransferase, DMATS-type / Tryptophan dimethylallyltransferase / Aromatic prenyltransferase / transferase activity, transferring alkyl or aryl (other than methyl) groups / alkaloid metabolic process / DIMETHYLALLYL S-THIOLODIPHOSPHATE / Chem-LBU / Aromatic prenyltransferase
Resolution: 1.84→45.219 Å / Cor.coef. Fo:Fc: 0.955 / Cor.coef. Fo:Fc free: 0.931 / SU B: 2.957 / SU ML: 0.091 / Cross valid method: THROUGHOUT / ESU R: 0.133 / ESU R Free: 0.132 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.22785
3847
5 %
RANDOM
Rwork
0.17971
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obs
0.1821
73216
99.27 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å