| Entry | Database: PDB / ID: 5jcz |
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| Title | Rab11 bound to MyoVa-GTD |
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Components | - Ras-related protein Rab-11A
- Unconventional myosin-Va
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Keywords | MOTOR PROTEIN / myosin / complex / Rab / motor cargo recognition |
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| Function / homology | Function and homology information
regulation of protein localization to centrosome / synaptic vesicle endosomal processing / regulation of endocytic recycling / establishment of vesicle localization / establishment of protein localization to organelle / postsynaptic recycling endosome / regulation of protein transport / positive regulation of mitotic cytokinetic process / vesicle transport along actin filament / insulin-responsive compartment ...regulation of protein localization to centrosome / synaptic vesicle endosomal processing / regulation of endocytic recycling / establishment of vesicle localization / establishment of protein localization to organelle / postsynaptic recycling endosome / regulation of protein transport / positive regulation of mitotic cytokinetic process / vesicle transport along actin filament / insulin-responsive compartment / regulation of cilium assembly / amyloid-beta clearance by transcytosis / post-Golgi vesicle-mediated transport / exosomal secretion / neurotransmitter receptor transport, endosome to postsynaptic membrane / presynaptic endosome / plasma membrane to endosome transport / VxPx cargo-targeting to cilium / filopodium tip / regulation of vesicle-mediated transport / melanosome transport / protein localization to cilium / astral microtubule organization / RAB geranylgeranylation / myosin V binding / multivesicular body assembly / actin filament-based movement / Golgi to plasma membrane protein transport / establishment of protein localization to membrane / syntaxin binding / endocytic recycling / myosin complex / TBC/RABGAPs / dynein light intermediate chain binding / centriolar satellite / exocytosis / microfilament motor activity / Insulin processing / cleavage furrow / Regulation of MITF-M-dependent genes involved in pigmentation / positive regulation of epithelial cell migration / mitotic spindle assembly / mitotic metaphase chromosome alignment / vesicle-mediated transport / multivesicular body / regulation of long-term neuronal synaptic plasticity / positive regulation of G2/M transition of mitotic cell cycle / transport vesicle / ruffle / phagocytic vesicle / centriole / Anchoring of the basal body to the plasma membrane / protein localization to plasma membrane / regulation of cytokinesis / endocytosis / small monomeric GTPase / FCGR3A-mediated phagocytosis / Translocation of SLC2A4 (GLUT4) to the plasma membrane / trans-Golgi network membrane / trans-Golgi network / positive regulation of protein localization to plasma membrane / Regulation of actin dynamics for phagocytic cup formation / cytoplasmic vesicle membrane / recycling endosome / Schaffer collateral - CA1 synapse / small GTPase binding / neuron projection development / phagocytic vesicle membrane / recycling endosome membrane / actin filament binding / actin cytoskeleton / endocytic vesicle membrane / melanosome / cellular response to insulin stimulus / synaptic vesicle membrane / cilium / Vasopressin regulates renal water homeostasis via Aquaporins / spindle pole / growth cone / G protein activity / cytoplasmic vesicle / microtubule binding / vesicle / neuron projection / endosome membrane / Golgi membrane / centrosome / GTPase activity / GTP binding / glutamatergic synapse / Golgi apparatus / ATP hydrolysis activity / protein-containing complex / RNA binding / extracellular exosome / ATP binding / membrane / plasma membrane / cytosol / cytoplasmSimilarity search - Function : / Myosin 5a, cargo-binding domain / : / Unconventional myosin-Va domain / Class V myosin, motor domain / Dilute domain / DIL domain / Dilute domain profile. / DIL / IQ calmodulin-binding motif ...: / Myosin 5a, cargo-binding domain / : / Unconventional myosin-Va domain / Class V myosin, motor domain / Dilute domain / DIL domain / Dilute domain profile. / DIL / IQ calmodulin-binding motif / Small GTPase Rab domain profile. / Myosin, N-terminal, SH3-like / Myosin N-terminal SH3-like domain profile. / Short calmodulin-binding motif containing conserved Ile and Gln residues. / IQ motif, EF-hand binding site / Myosin motor domain profile. / Myosin head, motor domain / Myosin head (motor domain) / Myosin. Large ATPases. / IQ motif profile. / Kinesin motor domain superfamily / Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases / Rho (Ras homology) subfamily of Ras-like small GTPases / Ras subfamily of RAS small GTPases / Small GTPase / Ras family / Rab subfamily of small GTPases / Small GTP-binding protein domain / P-loop containing nucleotide triphosphate hydrolases / Rossmann fold / P-loop containing nucleoside triphosphate hydrolase / 3-Layer(aba) Sandwich / Alpha BetaSimilarity search - Domain/homology ACETATE ION / BERYLLIUM TRIFLUORIDE ION / GUANOSINE-5'-DIPHOSPHATE / Ras-related protein Rab-11A / Unconventional myosin-VaSimilarity search - Component |
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| Biological species | Homo sapiens (human) |
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| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.056 Å |
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Authors | Pylypenko, O. / Attanda, W. / Gauquelin, C. / Malherbes, G. / Houdusse, A. |
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Citation | Journal: Elife / Year: 2016 Title: Coordinated recruitment of Spir actin nucleators and myosin V motors to Rab11 vesicle membranes. Authors: Pylypenko, O. / Welz, T. / Tittel, J. / Kollmar, M. / Chardon, F. / Malherbe, G. / Weiss, S. / Michel, C.I. / Samol-Wolf, A. / Grasskamp, A.T. / Hume, A. / Goud, B. / Baron, B. / England, P. ...Authors: Pylypenko, O. / Welz, T. / Tittel, J. / Kollmar, M. / Chardon, F. / Malherbe, G. / Weiss, S. / Michel, C.I. / Samol-Wolf, A. / Grasskamp, A.T. / Hume, A. / Goud, B. / Baron, B. / England, P. / Titus, M.A. / Schwille, P. / Weidemann, T. / Houdusse, A. / Kerkhoff, E. |
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| History | | Deposition | Apr 15, 2016 | Deposition site: RCSB / Processing site: PDBE |
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| Revision 1.0 | Sep 28, 2016 | Provider: repository / Type: Initial release |
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| Revision 2.0 | Oct 24, 2018 | Group: Atomic model / Data collection / Derived calculations Category: atom_site / pdbx_nonpoly_scheme ...atom_site / pdbx_nonpoly_scheme / struct_conn / struct_conn_type Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _pdbx_nonpoly_scheme.auth_seq_num |
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| Revision 2.1 | Jan 10, 2024 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_comp_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr2_label_atom_id / _pdbx_struct_conn_angle.ptnr2_label_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id |
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| Revision 2.2 | Aug 26, 2026 | Group: Derived calculations / Structure summary Category: pdbx_entry_details / pdbx_nonpoly_atom_coordination ...pdbx_entry_details / pdbx_nonpoly_atom_coordination / pdbx_nonpoly_atom_coordination_sphere / pdbx_nonpoly_atom_coordination_sphere_order Description: Metalloprotein remediation / Provider: repository / Type: Remediation |
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