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Open data
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Basic information
Entry | Database: PDB / ID: 5jcd | ||||||
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Title | Crystal structure of OsCEBiP | ||||||
![]() | Chitin elicitor-binding protein | ||||||
![]() | SUGAR BINDING PROTEIN / chitin receptor | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Chai, J.J. / Liu, S.M. / Wang, J.Z. | ||||||
![]() | ![]() Title: Molecular Mechanism for Fungal Cell Wall Recognition by Rice Chitin Receptor OsCEBiP Authors: Liu, S.M. / Wang, J.Z. / Han, Z. / Gong, X. / Zhang, H. / Chai, J.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 224.5 KB | Display | ![]() |
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PDB format | ![]() | 186 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 460.9 KB | Display | ![]() |
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Full document | ![]() | 467.4 KB | Display | |
Data in XML | ![]() | 23.2 KB | Display | |
Data in CIF | ![]() | 31.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 20679.328 Da / Num. of mol.: 3 / Fragment: UNP residues 29-223 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: CEBIP, Os03g0133400, LOC_Os03g04110, OJ1006F06.19, OsJ_30068 Production host: Insect cell expression vector pTIE1 (others) References: UniProt: Q8H8C7 #2: Sugar | ChemComp-NAG / #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.28 Å3/Da / Density % sol: 62.48 % |
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Crystal grow | Temperature: 292 K / Method: vapor diffusion, hanging drop / pH: 4.6 Details: 0.2 M ammonium acetate, 0.1 M sodium acetate trihydrate, 30%(w/v) PEG4000 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: AGILENT EOS CCD / Detector: CCD / Date: Sep 6, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.39→29.6 Å / Num. obs: 31051 / % possible obs: 98.3 % / Redundancy: 4 % / Net I/σ(I): 22 |
Reflection shell | Resolution: 2.4→2.48 Å |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.4→29.6 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Origin x: 16.3691 Å / Origin y: 43.112 Å / Origin z: 86.2985 Å
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Refinement TLS group | Selection details: ALL |