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- PDB-5hwf: The structural and biochemical characterization of acyl-coa hydro... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5hwf | ||||||
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Title | The structural and biochemical characterization of acyl-coa hydrolase mutant Asn28Ala from Staphylococcus aureus. | ||||||
![]() | Thioesterase | ||||||
![]() | HYDROLASE / Acyl CoA thioesterase / Staphylococcus aureus / Coenzyme A / Hotdog thioesterase | ||||||
Function / homology | ![]() long-chain fatty acyl-CoA binding / acyl-CoA metabolic process / fatty acyl-CoA hydrolase activity / fatty acid metabolic process / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Khandokar, Y.B. / Srivastava, P.S. / Forwood, J.K. | ||||||
![]() | ![]() Title: The structural and biochemical characterization of acyl-coa hydrolase from Staphylococcus aureus Authors: Khandokar, Y.B. / Srivastava, P.S. / Forwood, J.K. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 47.3 KB | Display | ![]() |
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PDB format | ![]() | 32.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 425.9 KB | Display | ![]() |
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Full document | ![]() | 428.1 KB | Display | |
Data in XML | ![]() | 7.9 KB | Display | |
Data in CIF | ![]() | 9.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5egjC ![]() 5egkC ![]() 5eglC ![]() 4ncpS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 20221.857 Da / Num. of mol.: 1 / Mutation: N28A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: Mu50 / ATCC 700699 / Gene: SAV1878 / Plasmid: pMCSG21 / Production host: ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.21 Å3/Da / Density % sol: 61.68 % |
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Crystal grow | Temperature: 296 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: 0.1M Sodium HEPES pH7.5, 0.8 M sodium phosphate monobasic |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Mar 29, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9537 Å / Relative weight: 1 |
Reflection | Resolution: 2.5→31.83 Å / Num. obs: 9615 / % possible obs: 99.9 % / Redundancy: 15.9 % / Net I/σ(I): 8.7 |
Reflection shell | Resolution: 2.5→2.6 Å / Rmerge(I) obs: 0.192 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4NCP Resolution: 2.5→30.66 Å / Cor.coef. Fo:Fc: 0.924 / Cor.coef. Fo:Fc free: 0.903 / SU B: 0.006 / SU ML: 0 / Cross valid method: THROUGHOUT / ESU R: 0.234 / ESU R Free: 0.267 / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||
Displacement parameters | Biso mean: 54.635 Å2
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Refinement step | Cycle: 1 / Resolution: 2.5→30.66 Å
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LS refinement shell | Resolution: 2.5→2.565 Å / Total num. of bins used: 20
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