virion component / base-excision repair / double-strand break repair via nonhomologous end joining / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / DNA binding / metal ion binding Similarity search - Function
Polymerase, nucleotidyl transferase domain / Nucleotidyltransferase domain / Beta Polymerase; domain 3 / DNA polymerase, thumb domain / DNA polymerase family X, binding site / DNA polymerase family X signature. / DNA polymerase family X / DNA polymerase beta, thumb domain / DNA polymerase beta thumb / DNA polymerase, thumb domain superfamily ...Polymerase, nucleotidyl transferase domain / Nucleotidyltransferase domain / Beta Polymerase; domain 3 / DNA polymerase, thumb domain / DNA polymerase family X, binding site / DNA polymerase family X signature. / DNA polymerase family X / DNA polymerase beta, thumb domain / DNA polymerase beta thumb / DNA polymerase, thumb domain superfamily / Beta Polymerase, domain 2 / Beta Polymerase; domain 2 / Nucleotidyltransferase superfamily / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homology
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE / : / DNA / DNA (> 10) / Repair DNA polymerase X / Repair DNA polymerase X Similarity search - Component
A: DNA polymerase beta-like protein B: DNA polymerase beta-like protein C: DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*CP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3' D: DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A)-3') E: DNA (5'-D(P*AP*TP*AP*GP*AP*AP*CP*G)-3') F: DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*CP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3' G: DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A)-3') H: DNA (5'-D(P*AP*TP*AP*GP*AP*AP*CP*G)-3') hetero molecules
A: DNA polymerase beta-like protein C: DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*CP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3' D: DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A)-3') E: DNA (5'-D(P*AP*TP*AP*GP*AP*AP*CP*G)-3') hetero molecules
B: DNA polymerase beta-like protein F: DNA (5'-D(*CP*GP*TP*TP*CP*TP*AP*TP*CP*TP*GP*TP*AP*CP*TP*CP*AP*C)-3' G: DNA (5'-D(*GP*TP*GP*AP*GP*TP*AP*CP*A)-3') H: DNA (5'-D(P*AP*TP*AP*GP*AP*AP*CP*G)-3') hetero molecules
Resolution: 2.2→29.36 Å / Cor.coef. Fo:Fc: 0.963 / Cor.coef. Fo:Fc free: 0.949 / SU B: 9.328 / SU ML: 0.11 / Cross valid method: THROUGHOUT / ESU R Free: 0.041 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.25475
2001
5 %
RANDOM
Rwork
0.2074
-
-
-
obs
0.20967
37862
99.48 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK