Entry | Database: PDB / ID: 5e4k |
---|
Title | Structure of ligand binding region of uPARAP at pH 7.4 |
---|
Components | C-type mannose receptor 2 |
---|
Keywords | SUGAR BINDING PROTEIN / endocytic collagen receptor |
---|
Function / homology | Function and homology information
Cross-presentation of soluble exogenous antigens (endosomes) / collagen catabolic process / collagen binding / osteoblast differentiation / endocytosis / signaling receptor activity / carbohydrate binding / focal adhesion / membraneSimilarity search - Function CD209-like, C-type lectin-like domain / : / Fibronectin type II domain / Fibronectin type II domain superfamily / Fibronectin type II domain / Fibronectin type-II collagen-binding domain signature. / Fibronectin type-II collagen-binding domain profile. / Fibronectin type 2 domain / C-type lectin, conserved site / C-type lectin domain signature. ...CD209-like, C-type lectin-like domain / : / Fibronectin type II domain / Fibronectin type II domain superfamily / Fibronectin type II domain / Fibronectin type-II collagen-binding domain signature. / Fibronectin type-II collagen-binding domain profile. / Fibronectin type 2 domain / C-type lectin, conserved site / C-type lectin domain signature. / Ricin-type beta-trefoil / Lectin domain of ricin B chain profile. / Ricin B, lectin domain / Ricin B-like lectins / Lectin C-type domain / C-type lectin domain profile. / C-type lectin-like / C-type lectin (CTL) or carbohydrate-recognition domain (CRD) / C-type lectin-like/link domain superfamily / C-type lectin fold / Kringle-like foldSimilarity search - Domain/homology |
---|
Biological species | Homo sapiens (human) |
---|
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.58 Å |
---|
Authors | Yuan, C. / Huang, M. |
---|
Funding support | China, 1items Organization | Grant number | Country |
---|
National Natural Science Foundation of China | 31570745 | China |
|
---|
Citation | Journal: Biochem.J. / Year: 2016 Title: Crystal structures of the ligand-binding region of uPARAP: effect of calcium ion binding Authors: Yuan, C. / Jurgensen, H.J. / Engelholm, L.H. / Li, R. / Liu, M. / Jiang, L. / Luo, Z. / Behrendt, N. / Huang, M. |
---|
History | Deposition | Oct 6, 2015 | Deposition site: RCSB / Processing site: PDBJ |
---|
Revision 1.0 | Aug 10, 2016 | Provider: repository / Type: Initial release |
---|
Revision 1.1 | Jul 29, 2020 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Structure summary Category: chem_comp / citation ...chem_comp / citation / entity / pdbx_chem_comp_identifier / pdbx_entity_nonpoly / pdbx_struct_oper_list / struct_conn / struct_site / struct_site_gen Item: _chem_comp.name / _chem_comp.pdbx_synonyms ..._chem_comp.name / _chem_comp.pdbx_synonyms / _chem_comp.type / _citation.journal_id_CSD / _entity.pdbx_description / _pdbx_entity_nonpoly.name / _pdbx_struct_oper_list.symmetry_operation / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id Description: Carbohydrate remediation / Provider: repository / Type: Remediation |
---|
Revision 1.2 | Nov 8, 2023 | Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary Category: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
---|
|
---|