登録情報 | データベース: PDB / ID: 5d3i |
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タイトル | Crystal structure of the SSL3-TLR2 complex |
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要素 | - Staphylococcal Superantigen-Like protein 3
- Toll-like receptor 2
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キーワード | IMMUNE SYSTEM / Superantigens / Superantigen-like proteins / SSL / SSL3 / Toll-like Receptor 2 / TLR2 / TLR6 / Immunology / Inflammation / Inhibition / Lipopeptide / phosphatidylcholine / PC / immune evasion / innate immunity |
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機能・相同性 | 機能・相同性情報
response to bacterial lipoprotein / diacyl lipopeptide binding / Beta defensins / triacyl lipopeptide binding / Toll-like receptor 2-Toll-like receptor 6 protein complex / detection of diacyl bacterial lipopeptide / positive regulation of neutrophil migration / cellular response to diacyl bacterial lipopeptide / Toll-like receptor 1-Toll-like receptor 2 protein complex / detection of triacyl bacterial lipopeptide ...response to bacterial lipoprotein / diacyl lipopeptide binding / Beta defensins / triacyl lipopeptide binding / Toll-like receptor 2-Toll-like receptor 6 protein complex / detection of diacyl bacterial lipopeptide / positive regulation of neutrophil migration / cellular response to diacyl bacterial lipopeptide / Toll-like receptor 1-Toll-like receptor 2 protein complex / detection of triacyl bacterial lipopeptide / cellular response to triacyl bacterial lipopeptide / cellular response to bacterial lipopeptide / Regulation of TLR by endogenous ligand / lipoteichoic acid binding / negative regulation of synapse assembly / response to molecule of fungal origin / cell surface pattern recognition receptor signaling pathway / regulation of dendritic cell cytokine production / response to peptidoglycan / positive regulation of interleukin-18 production / central nervous system myelin formation / positive regulation of xenophagy / xenophagy / leukotriene metabolic process / neutrophil migration / negative regulation of actin filament polymerization / lipopeptide binding / response to fatty acid / cellular response to peptidoglycan / negative regulation of interleukin-12 production / NAD+ nucleotidase, cyclic ADP-ribose generating / negative regulation of interleukin-17 production / microglia development / positive regulation of macrophage cytokine production / negative regulation of phagocytosis / positive regulation of leukocyte migration / positive regulation of intracellular signal transduction / MyD88-dependent toll-like receptor signaling pathway / pattern recognition receptor activity / toll-like receptor signaling pathway / nitric oxide metabolic process / positive regulation of oligodendrocyte differentiation / leukocyte migration / positive regulation of nitric-oxide synthase biosynthetic process / cellular response to lipoteichoic acid / positive regulation of interleukin-10 production / positive regulation of chemokine production / nitric oxide biosynthetic process / ERK1 and ERK2 cascade / positive regulation of interleukin-12 production / positive regulation of interferon-beta production / Neutrophil degranulation / positive regulation of interleukin-1 beta production / learning / positive regulation of cytokine production / cell projection / response to bacterium / microglial cell activation / defense response / positive regulation of inflammatory response / positive regulation of interleukin-6 production / phagocytic vesicle membrane / transmembrane signaling receptor activity / positive regulation of tumor necrosis factor production / positive regulation of nitric oxide biosynthetic process / signaling receptor activity / amyloid-beta binding / cell body / positive regulation of ERK1 and ERK2 cascade / defense response to Gram-positive bacterium / inflammatory response / membrane raft / negative regulation of cell population proliferation / external side of plasma membrane / innate immune response / protein-containing complex binding / Golgi apparatus / cell surface / positive regulation of transcription by RNA polymerase II / extracellular region / plasma membrane類似検索 - 分子機能 Staphylococcus aureus exotoxin / Staphylococcal superantigen-like OB-fold domain / Staphylococcal superantigen-like OB-fold domain / Toll-like receptor / Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved site / Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2. / Superantigen, staphylococcal/streptococcal toxin, bacterial / Ubiquitin-like (UB roll) - #120 / Superantigen toxin, C-terminal / OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #110 ...Staphylococcus aureus exotoxin / Staphylococcal superantigen-like OB-fold domain / Staphylococcal superantigen-like OB-fold domain / Toll-like receptor / Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin, conserved site / Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2. / Superantigen, staphylococcal/streptococcal toxin, bacterial / Ubiquitin-like (UB roll) - #120 / Superantigen toxin, C-terminal / OB fold (Dihydrolipoamide Acetyltransferase, E2P) - #110 / Leucine Rich repeat / TIR domain / Enterotoxin / Leucine-rich repeats, bacterial type / Cysteine-rich flanking region, C-terminal / Leucine rich repeat C-terminal domain / Toll - interleukin 1 - resistance / Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) / Ribonuclease Inhibitor / TIR domain profile. / Toll/interleukin-1 receptor homology (TIR) domain / Toll/interleukin-1 receptor homology (TIR) domain superfamily / Alpha-Beta Horseshoe / Leucine rich repeat / Leucine-rich repeat, typical subtype / Leucine-rich repeats, typical (most populated) subfamily / Leucine-rich repeat profile. / Leucine-rich repeat / Leucine-rich repeat domain superfamily / Ubiquitin-like (UB roll) / OB fold (Dihydrolipoamide Acetyltransferase, E2P) / Roll / Beta Barrel / Mainly Beta / Alpha Beta類似検索 - ドメイン・相同性 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE / Staphylococcal superantigen-like 3 / Toll-like receptor 2類似検索 - 構成要素 |
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生物種 | ![](img/tx_mammal.gif) Mus musculus (ハツカネズミ)
![](img/tx_bacteria.gif) Staphylococcus aureus (黄色ブドウ球菌) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 3.2 Å |
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データ登録者 | Feitsma, L.J. / Huizinga, E.G. |
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資金援助 | オランダ, 3件 組織 | 認可番号 | 国 |
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Netherlands Organization for Scientific Research | ECHO Grant 700.58.006 | オランダ | Netherlands Organization for Health Research and Development | ZonMw Grant 205200004 | オランダ | Dutch Top Institute Pharma Project | D1-101 | オランダ |
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引用 | ジャーナル: Proc.Natl.Acad.Sci.USA / 年: 2015 タイトル: Structural basis for inhibition of TLR2 by staphylococcal superantigen-like protein 3 (SSL3). 著者: Koymans, K.J. / Feitsma, L.J. / Brondijk, T.H. / Aerts, P.C. / Lukkien, E. / Lossl, P. / van Kessel, K.P. / de Haas, C.J. / van Strijp, J.A. / Huizinga, E.G. |
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履歴 | 登録 | 2015年8月6日 | 登録サイト: RCSB / 処理サイト: PDBE |
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改定 1.0 | 2015年8月19日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2015年9月2日 | Group: Database references |
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改定 1.2 | 2015年9月9日 | Group: Database references |
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改定 2.0 | 2020年7月29日 | Group: Advisory / Atomic model ...Advisory / Atomic model / Data collection / Derived calculations / Structure summary カテゴリ: atom_site / chem_comp ...atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_unobs_or_zero_occ_atoms / struct_asym / struct_conn / struct_site / struct_site_gen Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_entity_id / _chem_comp.name / _chem_comp.type / _pdbx_entity_nonpoly.entity_id / _pdbx_entity_nonpoly.name / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_unobs_or_zero_occ_atoms.label_asym_id / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id 解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation |
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改定 2.1 | 2024年5月1日 | Group: Data collection / Database references ...Data collection / Database references / Refinement description / Structure summary カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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