- PDB-5cmw: Crystal structure of yeast Ent5 N-terminal domain-soaked in KI -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 5cmw
Title
Crystal structure of yeast Ent5 N-terminal domain-soaked in KI
Components
Epsin-5
Keywords
PROTEIN TRANSPORT / Vesicular transport / ENT5 / N-terminal domain / inositol phosphate
Function / homology
Function and homology information
clathrin vesicle coat / early endosome to Golgi transport / Golgi to endosome transport / late endosome to vacuole transport via multivesicular body sorting pathway / phosphatidylinositol-3,5-bisphosphate binding / clathrin binding / phospholipid binding / endocytosis / protein transport / endosome membrane ...clathrin vesicle coat / early endosome to Golgi transport / Golgi to endosome transport / late endosome to vacuole transport via multivesicular body sorting pathway / phosphatidylinositol-3,5-bisphosphate binding / clathrin binding / phospholipid binding / endocytosis / protein transport / endosome membrane / endosome / plasma membrane / cytoplasm / cytosol Similarity search - Function
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.5498 Å / Relative weight: 1
Reflection
Resolution: 2.2→50 Å / Num. obs: 8783 / % possible obs: 99.4 % / Redundancy: 6.8 % / Net I/σ(I): 11.9
-
Processing
Software
Name
Version
Classification
REFMAC
5.7.0032
refinement
MOSFLM
datareduction
PHENIX
phasing
Coot
modelbuilding
Refinement
Method to determine structure: SAD / Resolution: 2.2→38.49 Å / Cor.coef. Fo:Fc: 0.913 / Cor.coef. Fo:Fc free: 0.864 / SU B: 5.958 / SU ML: 0.154 / Cross valid method: THROUGHOUT / ESU R: 0.321 / ESU R Free: 0.237 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2581
618
7 %
RANDOM
Rwork
0.20501
-
-
-
obs
0.20874
8153
99.21 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK