Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.9795 Å / Relative weight: 1
Reflection
Resolution: 2.5→50 Å / Num. obs: 19578 / % possible obs: 100 % / Redundancy: 20 % / Net I/σ(I): 18.1
-
Processing
Software
Name
Version
Classification
PHENIX
(phenix.refine: 1.9_1692)
refinement
HKL-2000
datareduction
HKL-2000
datascaling
PHENIX
phasing
Refinement
Method to determine structure: SAD / Resolution: 2.5→36.17 Å / SU ML: 0.25 / Cross valid method: THROUGHOUT / σ(F): 1.34 / Phase error: 28.65 / Stereochemistry target values: ML Details: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS AND F_PLUS/MINUS COLUMNS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2734
922
4.83 %
Random
Rwork
0.2177
-
-
-
obs
0.2203
19090
99.97 %
-
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement step
Cycle: LAST / Resolution: 2.5→36.17 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
1850
0
0
21
1871
Refine LS restraints
Refine-ID
Type
Dev ideal
Number
X-RAY DIFFRACTION
f_bond_d
0.002
1874
X-RAY DIFFRACTION
f_angle_d
0.476
2526
X-RAY DIFFRACTION
f_dihedral_angle_d
11.684
707
X-RAY DIFFRACTION
f_chiral_restr
0.02
304
X-RAY DIFFRACTION
f_plane_restr
0.002
319
LS refinement shell
Resolution (Å)
Rfactor Rfree
Num. reflection Rfree
Rfactor Rwork
Num. reflection Rwork
Refine-ID
% reflection obs (%)
2.4983-2.63
0.2681
120
0.2663
2620
X-RAY DIFFRACTION
100
2.63-2.7947
0.3756
149
0.2635
2570
X-RAY DIFFRACTION
100
2.7947-3.0104
0.2886
127
0.2661
2630
X-RAY DIFFRACTION
100
3.0104-3.3132
0.2974
138
0.2448
2555
X-RAY DIFFRACTION
100
3.3132-3.7922
0.2637
123
0.2027
2604
X-RAY DIFFRACTION
100
3.7922-4.776
0.2145
133
0.1753
2591
X-RAY DIFFRACTION
100
4.776-10
0.2839
132
0.209
2598
X-RAY DIFFRACTION
100
+
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