- PDB-5aox: Human Alu RNA retrotransposition complex in the ribosome-stalling... -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 5aox
Title
Human Alu RNA retrotransposition complex in the ribosome-stalling conformation
Components
(SIGNAL RECOGNITION PARTICLE ...) x 2
ALU JO CONSENSUS RNA
Keywords
TRANSLATION / RETROTRANSPOSITION / PROTEIN TARGETING / RNA / MOBILE DNA / SINE / LINE / RIBONUCLEOPROTEIN PARTICLE / SIGNAL RECOGNITION PARTICLE
Function / homology
Function and homology information
signal recognition particle receptor complex / signal recognition particle, endoplasmic reticulum targeting / signal recognition particle binding / cotranslational protein targeting to membrane / endoplasmic reticulum signal peptide binding / negative regulation of translational elongation / protein targeting to ER / SRP-dependent cotranslational protein targeting to membrane / 7S RNA binding / SRP-dependent cotranslational protein targeting to membrane ...signal recognition particle receptor complex / signal recognition particle, endoplasmic reticulum targeting / signal recognition particle binding / cotranslational protein targeting to membrane / endoplasmic reticulum signal peptide binding / negative regulation of translational elongation / protein targeting to ER / SRP-dependent cotranslational protein targeting to membrane / 7S RNA binding / SRP-dependent cotranslational protein targeting to membrane / secretory granule lumen / ficolin-1-rich granule lumen / Neutrophil degranulation / RNA binding / extracellular region / nucleus / cytoplasm / cytosol Similarity search - Function
Signal recognition particle alu RNA binding heterodimer, srp9/1 / Signal recognition particle, SRP9 subunit / SRP9 domain / Signal recognition particle SRP9 / Signal recognition particle 9 kDa protein (SRP9) / Signal recognition particle, SRP14 subunit / Signal recognition particle, SRP9/SRP14 subunit / Signal recognition particle 14kD protein / Signal recognition particle alu RNA binding heterodimer, srp9/1 / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homology
ACETATE ION / DI(HYDROXYETHYL)ETHER / RNA / RNA (> 10) / Signal recognition particle 14 kDa protein / Signal recognition particle 9 kDa protein Similarity search - Component
A: SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN B: SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN C: ALU JO CONSENSUS RNA D: SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN E: SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN F: ALU JO CONSENSUS RNA hetero molecules
Resolution: 2.04→56.746 Å / SU ML: 0.26 / σ(F): 2 / Phase error: 23.13 / Stereochemistry target values: ML Details: THE FOLLOWING RESIDUES ARE DISORDERED. CHAIN A, RESIDUES 78 TO 86. CHAIN B, RESIDUES 41 TO 48. CHAIN C, RESIDUES 68, 69. CHAIN D, RESIDUES 75 TO 86. CHAIN E, RESIDUES 41 TO 50. CHAIN F, ...Details: THE FOLLOWING RESIDUES ARE DISORDERED. CHAIN A, RESIDUES 78 TO 86. CHAIN B, RESIDUES 41 TO 48. CHAIN C, RESIDUES 68, 69. CHAIN D, RESIDUES 75 TO 86. CHAIN E, RESIDUES 41 TO 50. CHAIN F, RESIDUES 57, 69. THE FOLLOWING RESIDUES WERE TRUNCATED AT THE CB POSITIONS. CHAIN A, RESIDUES 76, 77. CHAIN B, RESIDUE 50. MG ION COORDINATION WAS RESTRAINED. HYDROGENS WERE ADDED IN THE RIDING POSITIONS.
Rfactor
Num. reflection
% reflection
Rfree
0.222
1539
3.1 %
Rwork
0.1855
-
-
obs
0.1866
49531
99.35 %
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL