- PDB-4k4i: Ternary crystal structures of a human DNA POLYMERASE LAMBDA IN CO... -
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Basic information
Entry
Database: PDB / ID: 4k4i
Title
Ternary crystal structures of a human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)FTC-TP.
Components
DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')
DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')
DNA (5'-D(P*GP*CP*CP*G)-3')
DNA polymerase lambda
Keywords
TRANSFERASE/DNA / DNA POLYMERASE / DNA REPAIR / PHOSPHORYL TRANSFER REACTION / TRANSFERASE-DNA complex
Function / homology
Function and homology information
DNA biosynthetic process / Lyases; Carbon-oxygen lyases; Other carbon-oxygen lyases / 5'-deoxyribose-5-phosphate lyase activity / somatic hypermutation of immunoglobulin genes / base-excision repair, gap-filling / nucleotide-excision repair / Nonhomologous End-Joining (NHEJ) / double-strand break repair via homologous recombination / double-strand break repair via nonhomologous end joining / site of double-strand break ...DNA biosynthetic process / Lyases; Carbon-oxygen lyases; Other carbon-oxygen lyases / 5'-deoxyribose-5-phosphate lyase activity / somatic hypermutation of immunoglobulin genes / base-excision repair, gap-filling / nucleotide-excision repair / Nonhomologous End-Joining (NHEJ) / double-strand break repair via homologous recombination / double-strand break repair via nonhomologous end joining / site of double-strand break / DNA replication / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / DNA binding / nucleoplasm / nucleus / metal ion binding Similarity search - Function
Beta Polymerase; domain 3 / DNA polymerase, thumb domain / DNA polymerase family X, beta-like / DNA polymerase beta, N-terminal domain-like / DNA polymerase beta, palm domain / DNA polymerase beta palm / DNA polymerase lambda, fingers domain / Fingers domain of DNA polymerase lambda / DNA-directed DNA polymerase X / DNA polymerase beta-like, N-terminal domain ...Beta Polymerase; domain 3 / DNA polymerase, thumb domain / DNA polymerase family X, beta-like / DNA polymerase beta, N-terminal domain-like / DNA polymerase beta, palm domain / DNA polymerase beta palm / DNA polymerase lambda, fingers domain / Fingers domain of DNA polymerase lambda / DNA-directed DNA polymerase X / DNA polymerase beta-like, N-terminal domain / Helix-hairpin-helix domain / DNA polymerase X family / DNA polymerase family X, binding site / DNA polymerase family X signature. / DNA polymerase lambda lyase domain superfamily / DNA polymerase family X / DNA polymerase beta, thumb domain / DNA polymerase beta thumb / DNA polymerase, thumb domain superfamily / Beta Polymerase, domain 2 / Beta Polymerase; domain 2 / BRCT domain profile. / BRCT domain / BRCT domain superfamily / Nucleotidyltransferase superfamily / 5' to 3' exonuclease, C-terminal subdomain / DNA polymerase; domain 1 / 2-Layer Sandwich / Orthogonal Bundle / Mainly Alpha / Alpha Beta Similarity search - Domain/homology
A: DNA polymerase lambda B: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') C: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') D: DNA (5'-D(P*GP*CP*CP*G)-3') E: DNA polymerase lambda F: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') G: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') H: DNA (5'-D(P*GP*CP*CP*G)-3') I: DNA polymerase lambda J: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') K: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') L: DNA (5'-D(P*GP*CP*CP*G)-3') M: DNA polymerase lambda N: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') O: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') P: DNA (5'-D(P*GP*CP*CP*G)-3') hetero molecules
A: DNA polymerase lambda B: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') C: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') D: DNA (5'-D(P*GP*CP*CP*G)-3') hetero molecules
E: DNA polymerase lambda F: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') G: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') H: DNA (5'-D(P*GP*CP*CP*G)-3') hetero molecules
I: DNA polymerase lambda J: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') K: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') L: DNA (5'-D(P*GP*CP*CP*G)-3') hetero molecules
M: DNA polymerase lambda N: DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3') O: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3') P: DNA (5'-D(P*GP*CP*CP*G)-3') hetero molecules
DNApolymeraselambda / Pol Lambda / DNA polymerase beta-2 / Pol beta2 / DNA polymerase kappa
Mass: 38254.574 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: POLL / Production host: Escherichia coli (E. coli) References: UniProt: Q9UGP5, DNA-directed DNA polymerase, Lyases; Carbon-oxygen lyases; Other carbon-oxygen lyases
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DNA chain , 3 types, 12 molecules BFJNCGKODHLP
#2: DNA chain
DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')
Mass: 3390.209 Da / Num. of mol.: 4 / Source method: obtained synthetically
#3: DNA chain
DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')
Mass: 1793.219 Da / Num. of mol.: 4 / Source method: obtained synthetically
#4: DNA chain
DNA (5'-D(P*GP*CP*CP*G)-3')
Mass: 1191.818 Da / Num. of mol.: 4 / Source method: obtained synthetically