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- PDB-4zjs: Crystal structure of a chimeric acetylcholine binding protein fro... -
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Basic information
Entry | Database: PDB / ID: 4zjs | ||||||
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Title | Crystal structure of a chimeric acetylcholine binding protein from Aplysia Californica (Ac-AChBP) containing the main immunogenic region (MIR) from the human alpha 1 subunit of the muscle nicotinic acetylcholine receptor in complex with anatoxin-A. | ||||||
![]() | Acetylcholine receptor subunit alpha,Soluble acetylcholine receptor,Acetylcholine receptor subunit alpha,Soluble acetylcholine receptor | ||||||
![]() | IMMUNE SYSTEM / anatoxin-A / nicotinic / receptor / acetylcholine | ||||||
Function / homology | ![]() skeletal muscle tissue growth / musculoskeletal movement / Highly calcium permeable nicotinic acetylcholine receptors / Highly calcium permeable postsynaptic nicotinic acetylcholine receptors / neuromuscular synaptic transmission / acetylcholine-gated channel complex / acetylcholine receptor activity / synaptic transmission, cholinergic / acetylcholine binding / postsynaptic specialization membrane ...skeletal muscle tissue growth / musculoskeletal movement / Highly calcium permeable nicotinic acetylcholine receptors / Highly calcium permeable postsynaptic nicotinic acetylcholine receptors / neuromuscular synaptic transmission / acetylcholine-gated channel complex / acetylcholine receptor activity / synaptic transmission, cholinergic / acetylcholine binding / postsynaptic specialization membrane / acetylcholine receptor signaling pathway / neuromuscular process / acetylcholine-gated monoatomic cation-selective channel activity / neuromuscular junction development / muscle cell cellular homeostasis / skeletal muscle contraction / neuronal action potential / transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential / regulation of membrane potential / response to nicotine / neuromuscular junction / neuron cellular homeostasis / monoatomic ion channel activity / postsynaptic membrane / neuron projection / synapse / cell surface / signal transduction / identical protein binding / membrane / metal ion binding / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Talley, T.T. / Bobango, J. / Wu, J. / Park, J.F. / Luo, J. / Lindsatrom, J. / Taylor, P. | ||||||
![]() | ![]() Title: Main immunogenic region structure promotes binding of conformation-dependent myasthenia gravis autoantibodies, nicotinic acetylcholine receptor conformation maturation, and agonist sensitivity. Authors: Luo, J. / Taylor, P. / Losen, M. / de Baets, M.H. / Shelton, G.D. / Lindstrom, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 211.2 KB | Display | ![]() |
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PDB format | ![]() | 169.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 477.9 KB | Display | ![]() |
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Full document | ![]() | 482.7 KB | Display | |
Data in XML | ![]() | 36.8 KB | Display | |
Data in CIF | ![]() | 51.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 2bynS ![]() 2bypS ![]() 2byrS ![]() 2bysS ![]() 2pgzS ![]() 3c84S S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 26309.240 Da / Num. of mol.: 5 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Gene: CHRNA1, ACHRA, CHNRA / Production host: ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.83 Å3/Da / Density % sol: 56.6 % |
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Crystal grow | Temperature: 297 K / Method: vapor diffusion, hanging drop Details: 17. 25.5% PEG 4000, 0.085 M Tris HCl pH 8.5, 0.17 M Lithium Sulfate, 15% Glycerol PH range: 8.5 |
-Data collection
Diffraction | Mean temperature: 88 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Aug 29, 2009 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.999 Å / Relative weight: 1 |
Reflection | Resolution: 2.23→50 Å / Num. all: 72166 / Num. obs: 72156 / % possible obs: 100 % / Redundancy: 37.9 % / Biso Wilson estimate: 36.57 Å2 / Rmerge(I) obs: 0.191 / Net I/σ(I): 5 |
Reflection shell | Resolution: 2.23→2.27 Å / Redundancy: 17.2 % / Rmerge(I) obs: 0.952 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2BYN, 2PGZ, 2BYP, 2BYS, 2BYR, 3C84, and a homology model Resolution: 2.2301→48.93 Å / SU ML: 0.26 / Cross valid method: NONE / σ(F): 1.34 / Phase error: 23.6 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 36.11 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.2301→48.93 Å
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Refine LS restraints |
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LS refinement shell |
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