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Open data
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Basic information
Entry | Database: PDB / ID: 4z61 | ||||||
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Title | The plant peptide hormone receptor complex | ||||||
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![]() | TRANSFERASE / hormone receptor / complex | ||||||
Function / homology | ![]() microsporogenesis / pollen maturation / brassinosteroid mediated signaling pathway / response to other organism / receptor serine/threonine kinase binding / defense response / non-specific serine/threonine protein kinase / phosphorylation / protein serine kinase activity / signaling receptor binding ...microsporogenesis / pollen maturation / brassinosteroid mediated signaling pathway / response to other organism / receptor serine/threonine kinase binding / defense response / non-specific serine/threonine protein kinase / phosphorylation / protein serine kinase activity / signaling receptor binding / protein serine/threonine kinase activity / lipid binding / ATP binding / nucleus / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Chai, J. / Wang, J. | ||||||
![]() | ![]() Title: Allosteric receptor activation by the plant peptide hormone phytosulfokine Authors: Wang, J. / Li, H. / Han, Z. / Zhang, H. / Wang, T. / Lin, G. / Chang, J. / Yang, W. / Chai, J. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 314.4 KB | Display | ![]() |
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PDB format | ![]() | 256.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 511.2 KB | Display | ![]() |
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Full document | ![]() | 541.7 KB | Display | |
Data in XML | ![]() | 58.7 KB | Display | |
Data in CIF | ![]() | 80.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 70140.000 Da / Num. of mol.: 2 / Fragment: UNP residues 24-659 / Mutation: A245E, I355L, E368A, A575S, A613D, V625A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: Insect cell expression vector pTIE1 (others) References: UniProt: Q8LPB4, non-specific serine/threonine protein kinase #2: Protein | Mass: 24441.812 Da / Num. of mol.: 2 / Fragment: UNP residues 1-216 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Production host: Insect cell expression vector pTIE1 (others) References: UniProt: Q9XIC7, non-specific serine/threonine protein kinase #3: Protein/peptide | Mass: 846.879 Da / Num. of mol.: 2 / Source method: obtained synthetically / Source: (synth.) ![]() ![]() #4: Sugar | ChemComp-NAG / #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.38 Å3/Da / Density % sol: 63.56 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop Details: 0.1M sodium citrate pH 5.5, 0.4M KCl, 30%(v/v) Pentaerythritol propoxylate (5/4 PO/OH) |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: BRUKER SMART 6500 / Detector: CCD / Date: Mar 9, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.75→99 Å / Num. obs: 54303 / % possible obs: 88.8 % / Redundancy: 2 % / Net I/σ(I): 14.7 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.75→29.87 Å
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Refine LS restraints |
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LS refinement shell |
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