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- PDB-4wsn: Crystal structure of the COP9 signalosome, a P1 crystal form -

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Basic information

Entry
Database: PDB / ID: 4wsn
TitleCrystal structure of the COP9 signalosome, a P1 crystal form
Components(COP9 signalosome complex subunit ...) x 8
KeywordsSIGNALING PROTEIN / hydrolase
Function / homology
Function and homology information


regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator / COP9 signalosome assembly / trophectodermal cell proliferation / macrophage migration inhibitory factor binding / regulation of IRE1-mediated unfolded protein response / exosomal secretion / deNEDDylase activity / GTPase inhibitor activity / eukaryotic translation initiation factor 3 complex / regulation of protein neddylation ...regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator / COP9 signalosome assembly / trophectodermal cell proliferation / macrophage migration inhibitory factor binding / regulation of IRE1-mediated unfolded protein response / exosomal secretion / deNEDDylase activity / GTPase inhibitor activity / eukaryotic translation initiation factor 3 complex / regulation of protein neddylation / protein deneddylation / COP9 signalosome / metal-dependent deubiquitinase activity / activation of NF-kappaB-inducing kinase activity / protein neddylation / Hydrolases; Acting on peptide bonds (peptidases) / RHOBTB1 GTPase cycle / inner cell mass cell proliferation / protein deubiquitination / skeletal muscle cell differentiation / regulation of JNK cascade / response to light stimulus / JNK cascade / translation initiation factor activity / post-translational protein modification / DNA Damage Recognition in GG-NER / neuron differentiation / Formation of TC-NER Pre-Incision Complex / transcription corepressor activity / metallopeptidase activity / positive regulation of DNA-binding transcription factor activity / synaptic vesicle / Cargo recognition for clathrin-mediated endocytosis / cell junction / Neddylation / ubiquitin-dependent protein catabolic process / in utero embryonic development / transcription by RNA polymerase II / transcription coactivator activity / regulation of cell cycle / nuclear speck / translation / negative regulation of cell population proliferation / protein phosphorylation / chromatin / negative regulation of apoptotic process / perinuclear region of cytoplasm / negative regulation of transcription by RNA polymerase II / enzyme binding / signal transduction / positive regulation of transcription by RNA polymerase II / proteolysis / extracellular exosome / nucleoplasm / metal ion binding / nucleus / cytosol / cytoplasm
Similarity search - Function
COP9 signalosome, subunit CSN8 / COP9 signalosome complex subunit 7, helix I / : / : / COP9 signalosome complex subunit 7a helix I domain / COP9 signalosome complex subunit 1, C-terminal helix / COP9 signalosome complex subunit 3-like, C-terminal helix / COP9 signalosome subunit 6 / Cop9 signalosome subunit 5 C-terminal domain / COP9 signalosome complex subunit 4, helix turn helix domain ...COP9 signalosome, subunit CSN8 / COP9 signalosome complex subunit 7, helix I / : / : / COP9 signalosome complex subunit 7a helix I domain / COP9 signalosome complex subunit 1, C-terminal helix / COP9 signalosome complex subunit 3-like, C-terminal helix / COP9 signalosome subunit 6 / Cop9 signalosome subunit 5 C-terminal domain / COP9 signalosome complex subunit 4, helix turn helix domain / Cop9 signalosome subunit 5 C-terminal domain / CSN4/RPN5/eIF3a helix turn helix domain / Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7 / 26S proteasome regulatory subunit Rpn7, N-terminal / 26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1 / 26S proteasome subunit RPN7 / 26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4 / PCI/PINT associated module / CSN8/PSMD8/EIF3K / CSN8/PSMD8/EIF3K family / Rpn11/EIF3F, C-terminal / Maintenance of mitochondrial structure and function / motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 / PCI domain / Proteasome component (PCI) domain / PCI domain profile. / JAB1/Mov34/MPN/PAD-1 ubiquitin protease / JAB/MPN domain / JAB1/MPN/MOV34 metalloenzyme domain / MPN domain / MPN domain profile. / Tetratricopeptide-like helical domain superfamily / Winged helix DNA-binding domain superfamily / Winged helix-like DNA-binding domain superfamily
Similarity search - Domain/homology
COP9 signalosome complex subunit 2 / COP9 signalosome complex subunit 1 / COP9 signalosome complex subunit 6 / COP9 signalosome complex subunit 5 / COP9 signalosome complex subunit 8 / COP9 signalosome complex subunit 4 / COP9 signalosome complex subunit 7a / COP9 signalosome complex subunit 3
Similarity search - Component
Biological speciesHomo sapiens (human)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 5.5 Å
AuthorsBunker, R.D. / Lingaraju, G.M. / Thoma, N.H.
CitationJournal: Nature / Year: 2016
Title: Cullin-RING ubiquitin E3 ligase regulation by the COP9 signalosome.
Authors: Simone Cavadini / Eric S Fischer / Richard D Bunker / Alessandro Potenza / Gondichatnahalli M Lingaraju / Kenneth N Goldie / Weaam I Mohamed / Mahamadou Faty / Georg Petzold / Rohan E J ...Authors: Simone Cavadini / Eric S Fischer / Richard D Bunker / Alessandro Potenza / Gondichatnahalli M Lingaraju / Kenneth N Goldie / Weaam I Mohamed / Mahamadou Faty / Georg Petzold / Rohan E J Beckwith / Ritesh B Tichkule / Ulrich Hassiepen / Wassim Abdulrahman / Radosav S Pantelic / Syota Matsumoto / Kaoru Sugasawa / Henning Stahlberg / Nicolas H Thomä /
Abstract: The cullin-RING ubiquitin E3 ligase (CRL) family comprises over 200 members in humans. The COP9 signalosome complex (CSN) regulates CRLs by removing their ubiquitin-like activator NEDD8. The CUL4A- ...The cullin-RING ubiquitin E3 ligase (CRL) family comprises over 200 members in humans. The COP9 signalosome complex (CSN) regulates CRLs by removing their ubiquitin-like activator NEDD8. The CUL4A-RBX1-DDB1-DDB2 complex (CRL4A(DDB2)) monitors the genome for ultraviolet-light-induced DNA damage. CRL4A(DBB2) is inactive in the absence of damaged DNA and requires CSN to regulate the repair process. The structural basis of CSN binding to CRL4A(DDB2) and the principles of CSN activation are poorly understood. Here we present cryo-electron microscopy structures for CSN in complex with neddylated CRL4A ligases to 6.4 Å resolution. The CSN conformers defined by cryo-electron microscopy and a novel apo-CSN crystal structure indicate an induced-fit mechanism that drives CSN activation by neddylated CRLs. We find that CSN and a substrate cannot bind simultaneously to CRL4A, favouring a deneddylated, inactive state for substrate-free CRL4 complexes. These architectural and regulatory principles appear conserved across CRL families, allowing global regulation by CSN.
History
DepositionOct 28, 2014Deposition site: RCSB / Processing site: PDBE
Revision 1.0Dec 23, 2015Provider: repository / Type: Initial release
Revision 1.1Apr 6, 2016Group: Database references
Revision 1.2Apr 13, 2016Group: Database references
Revision 1.3Mar 27, 2019Group: Data collection / Source and taxonomy / Category: entity_src_gen
Item: _entity_src_gen.pdbx_host_org_cell_line / _entity_src_gen.pdbx_host_org_strain
Revision 1.4Jan 10, 2024Group: Data collection / Database references / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ncs_dom_lim
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: COP9 signalosome complex subunit 1
B: COP9 signalosome complex subunit 2
C: COP9 signalosome complex subunit 3
D: COP9 signalosome complex subunit 4
E: COP9 signalosome complex subunit 5
F: COP9 signalosome complex subunit 6
G: COP9 signalosome complex subunit 7a
H: COP9 signalosome complex subunit 8
I: COP9 signalosome complex subunit 1
J: COP9 signalosome complex subunit 2
K: COP9 signalosome complex subunit 3
L: COP9 signalosome complex subunit 4
M: COP9 signalosome complex subunit 5
N: COP9 signalosome complex subunit 6
O: COP9 signalosome complex subunit 7a
P: COP9 signalosome complex subunit 8
Q: COP9 signalosome complex subunit 1
R: COP9 signalosome complex subunit 2
S: COP9 signalosome complex subunit 3
T: COP9 signalosome complex subunit 4
U: COP9 signalosome complex subunit 5
V: COP9 signalosome complex subunit 6
W: COP9 signalosome complex subunit 7a
X: COP9 signalosome complex subunit 8
Y: COP9 signalosome complex subunit 1
Z: COP9 signalosome complex subunit 2
a: COP9 signalosome complex subunit 3
b: COP9 signalosome complex subunit 4
c: COP9 signalosome complex subunit 5
d: COP9 signalosome complex subunit 6
e: COP9 signalosome complex subunit 7a
f: COP9 signalosome complex subunit 8
g: COP9 signalosome complex subunit 1
h: COP9 signalosome complex subunit 2
i: COP9 signalosome complex subunit 3
j: COP9 signalosome complex subunit 4
k: COP9 signalosome complex subunit 5
l: COP9 signalosome complex subunit 6
m: COP9 signalosome complex subunit 7a
n: COP9 signalosome complex subunit 8
o: COP9 signalosome complex subunit 1
p: COP9 signalosome complex subunit 2
q: COP9 signalosome complex subunit 3
r: COP9 signalosome complex subunit 4
s: COP9 signalosome complex subunit 5
t: COP9 signalosome complex subunit 6
u: COP9 signalosome complex subunit 7a
v: COP9 signalosome complex subunit 8
hetero molecules


Theoretical massNumber of molelcules
Total (without water)1,935,48654
Polymers1,935,09348
Non-polymers3926
Water0
1
A: COP9 signalosome complex subunit 1
B: COP9 signalosome complex subunit 2
C: COP9 signalosome complex subunit 3
D: COP9 signalosome complex subunit 4
E: COP9 signalosome complex subunit 5
F: COP9 signalosome complex subunit 6
G: COP9 signalosome complex subunit 7a
H: COP9 signalosome complex subunit 8
hetero molecules


Theoretical massNumber of molelcules
Total (without water)322,5819
Polymers322,5168
Non-polymers651
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area37230 Å2
ΔGint-257 kcal/mol
Surface area121770 Å2
MethodPISA
2
I: COP9 signalosome complex subunit 1
J: COP9 signalosome complex subunit 2
K: COP9 signalosome complex subunit 3
L: COP9 signalosome complex subunit 4
M: COP9 signalosome complex subunit 5
N: COP9 signalosome complex subunit 6
O: COP9 signalosome complex subunit 7a
P: COP9 signalosome complex subunit 8
hetero molecules


Theoretical massNumber of molelcules
Total (without water)322,5819
Polymers322,5168
Non-polymers651
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area37070 Å2
ΔGint-256 kcal/mol
Surface area121810 Å2
MethodPISA
3
Q: COP9 signalosome complex subunit 1
R: COP9 signalosome complex subunit 2
S: COP9 signalosome complex subunit 3
T: COP9 signalosome complex subunit 4
U: COP9 signalosome complex subunit 5
V: COP9 signalosome complex subunit 6
W: COP9 signalosome complex subunit 7a
X: COP9 signalosome complex subunit 8
hetero molecules


Theoretical massNumber of molelcules
Total (without water)322,5819
Polymers322,5168
Non-polymers651
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area37320 Å2
ΔGint-259 kcal/mol
Surface area121690 Å2
MethodPISA
4
Y: COP9 signalosome complex subunit 1
Z: COP9 signalosome complex subunit 2
a: COP9 signalosome complex subunit 3
b: COP9 signalosome complex subunit 4
c: COP9 signalosome complex subunit 5
d: COP9 signalosome complex subunit 6
e: COP9 signalosome complex subunit 7a
f: COP9 signalosome complex subunit 8
hetero molecules


Theoretical massNumber of molelcules
Total (without water)322,5819
Polymers322,5168
Non-polymers651
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area37060 Å2
ΔGint-255 kcal/mol
Surface area121730 Å2
MethodPISA
5
g: COP9 signalosome complex subunit 1
h: COP9 signalosome complex subunit 2
i: COP9 signalosome complex subunit 3
j: COP9 signalosome complex subunit 4
k: COP9 signalosome complex subunit 5
l: COP9 signalosome complex subunit 6
m: COP9 signalosome complex subunit 7a
n: COP9 signalosome complex subunit 8
hetero molecules


Theoretical massNumber of molelcules
Total (without water)322,5819
Polymers322,5168
Non-polymers651
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area37410 Å2
ΔGint-256 kcal/mol
Surface area121410 Å2
MethodPISA
6
o: COP9 signalosome complex subunit 1
p: COP9 signalosome complex subunit 2
q: COP9 signalosome complex subunit 3
r: COP9 signalosome complex subunit 4
s: COP9 signalosome complex subunit 5
t: COP9 signalosome complex subunit 6
u: COP9 signalosome complex subunit 7a
v: COP9 signalosome complex subunit 8
hetero molecules


Theoretical massNumber of molelcules
Total (without water)322,5819
Polymers322,5168
Non-polymers651
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area37560 Å2
ΔGint-258 kcal/mol
Surface area121280 Å2
MethodPISA
Unit cell
Length a, b, c (Å)150.638, 150.983, 336.720
Angle α, β, γ (deg.)92.340, 92.620, 119.880
Int Tables number1
Space group name H-MP1
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11A
21I
12A
22Q
13A
23Y
14A
24g
15A
25o
16B
26J
17B
27R
18B
28Z
19B
29h
110B
210p
111C
211K
112C
212S
113C
213a
114C
214i
115C
215q
116D
216L
117D
217T
118D
218b
119D
219j
120D
220r
121E
221M
122E
222U
123E
223c
124E
224k
125E
225s
126F
226N
127F
227V
128F
228d
129F
229l
130F
230t
131G
231O
132G
232W
133G
233e
134G
234m
135G
235u
136H
236P
137H
237X
138H
238f
139H
239n
140H
240v
141I
241Q
142I
242Y
143I
243g
144I
244o
145J
245R
146J
246Z
147J
247h
148J
248p
149K
249S
150K
250a
151K
251i
152K
252q
153L
253T
154L
254b
155L
255j
156L
256r
157M
257U
158M
258c
159M
259k
160M
260s
161N
261V
162N
262d
163N
263l
164N
264t
165O
265W
166O
266e
167O
267m
168O
268u
169P
269X
170P
270f
171P
271n
172P
272v
173Q
273Y
174Q
274g
175Q
275o
176R
276Z
177R
277h
178R
278p
179S
279a
180S
280i
181S
281q
182T
282b
183T
283j
184T
284r
185U
285c
186U
286k
187U
287s
188V
288d
189V
289l
190V
290t
191W
291e
192W
292m
193W
293u
194X
294f
195X
295n
196X
296v
197Y
297g
198Y
298o
199Z
299h
1100Z
2100p
1101a
2101i
1102a
2102q
1103b
2103j
1104b
2104r
1105c
2105k
1106c
2106s
1107d
2107l
1108d
2108t
1109e
2109m
1110e
2110u
1111f
2111n
1112f
2112v
1113g
2113o
1114h
2114p
1115i
2115q
1116j
2116r
1117k
2117s
1118l
2118t
1119m
2119u
1120n
2120v

NCS domain segments:

Component-ID: 0 / Refine code: 0

Dom-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11VALVALPROPROAA77 - 50530 - 458
21VALVALPROPROII77 - 50530 - 458
12VALVALPROPROAA77 - 50530 - 458
22VALVALPROPROQQ77 - 50530 - 458
13VALVALPROPROAA77 - 50530 - 458
23VALVALPROPROYY77 - 50530 - 458
14VALVALPROPROAA77 - 50530 - 458
24VALVALPROPROgGA77 - 50530 - 458
15VALVALPROPROAA77 - 50530 - 458
25VALVALPROPROoOA77 - 50530 - 458
16VALVALALAALABB30 - 44334 - 447
26VALVALALAALAJJ30 - 44334 - 447
17VALVALALAALABB30 - 44334 - 447
27VALVALALAALARR30 - 44334 - 447
18VALVALALAALABB30 - 44334 - 447
28VALVALALAALAZZ30 - 44334 - 447
19VALVALALAALABB30 - 44334 - 447
29VALVALALAALAhHA30 - 44334 - 447
110VALVALALAALABB30 - 44334 - 447
210VALVALALAALApPA30 - 44334 - 447
111SERSERPHEPHECC3 - 4037 - 407
211SERSERPHEPHEKK3 - 4037 - 407
112SERSERPHEPHECC3 - 4037 - 407
212SERSERPHEPHESS3 - 4037 - 407
113SERSERPHEPHECC3 - 4037 - 407
213SERSERPHEPHEaAA3 - 4037 - 407
114SERSERPHEPHECC3 - 4037 - 407
214SERSERPHEPHEiIA3 - 4037 - 407
115SERSERPHEPHECC3 - 4037 - 407
215SERSERPHEPHEqQA3 - 4037 - 407
116METMETGLNGLNDD1 - 4065 - 410
216METMETGLNGLNLL1 - 4065 - 410
117METMETGLNGLNDD1 - 4065 - 410
217METMETGLNGLNTT1 - 4065 - 410
118METMETGLNGLNDD1 - 4065 - 410
218METMETGLNGLNbBA1 - 4065 - 410
119METMETGLNGLNDD1 - 4065 - 410
219METMETGLNGLNjJA1 - 4065 - 410
120METMETGLNGLNDD1 - 4065 - 410
220METMETGLNGLNrRA1 - 4065 - 410
121SERSERILEILEEE24 - 33315 - 324
221SERSERILEILEMM24 - 33315 - 324
122SERSERILEILEEE24 - 33315 - 324
222SERSERILEILEUU24 - 33315 - 324
123SERSERILEILEEE24 - 33315 - 324
223SERSERILEILEcCA24 - 33315 - 324
124SERSERILEILEEE24 - 33315 - 324
224SERSERILEILEkKA24 - 33315 - 324
125SERSERILEILEEE24 - 33315 - 324
225SERSERILEILEsSA24 - 33315 - 324
126SERSERGLNGLNFF29 - 31633 - 320
226SERSERGLNGLNNN29 - 31633 - 320
127SERSERGLNGLNFF29 - 31633 - 320
227SERSERGLNGLNVV29 - 31633 - 320
128SERSERGLNGLNFF29 - 31633 - 320
228SERSERGLNGLNdDA29 - 31633 - 320
129SERSERGLNGLNFF29 - 31633 - 320
229SERSERGLNGLNlLA29 - 31633 - 320
130SERSERGLNGLNFF29 - 31633 - 320
230SERSERGLNGLNtTA29 - 31633 - 320
131THRTHRASNASNGG8 - 21512 - 219
231THRTHRASNASNOO8 - 21512 - 219
132THRTHRASNASNGG8 - 21512 - 219
232THRTHRASNASNWW8 - 21512 - 219
133THRTHRASNASNGG8 - 21512 - 219
233THRTHRASNASNeEA8 - 21512 - 219
134THRTHRASNASNGG8 - 21512 - 219
234THRTHRASNASNmMA8 - 21512 - 219
135THRTHRASNASNGG8 - 21512 - 219
235THRTHRASNASNuUA8 - 21512 - 219
136PHEPHEASNASNHH11 - 20915 - 213
236PHEPHEASNASNPP11 - 20915 - 213
137PHEPHEASNASNHH11 - 20915 - 213
237PHEPHEASNASNXX11 - 20915 - 213
138PHEPHEASNASNHH11 - 20915 - 213
238PHEPHEASNASNfFA11 - 20915 - 213
139PHEPHEASNASNHH11 - 20915 - 213
239PHEPHEASNASNnNA11 - 20915 - 213
140PHEPHEASNASNHH11 - 20915 - 213
240PHEPHEASNASNvVA11 - 20915 - 213
141VALVALPROPROII77 - 50530 - 458
241VALVALPROPROQQ77 - 50530 - 458
142VALVALPROPROII77 - 50530 - 458
242VALVALPROPROYY77 - 50530 - 458
143VALVALPROPROII77 - 50530 - 458
243VALVALPROPROgGA77 - 50530 - 458
144VALVALPROPROII77 - 50530 - 458
244VALVALPROPROoOA77 - 50530 - 458
145VALVALALAALAJJ30 - 44334 - 447
245VALVALALAALARR30 - 44334 - 447
146VALVALALAALAJJ30 - 44334 - 447
246VALVALALAALAZZ30 - 44334 - 447
147VALVALALAALAJJ30 - 44334 - 447
247VALVALALAALAhHA30 - 44334 - 447
148VALVALALAALAJJ30 - 44334 - 447
248VALVALALAALApPA30 - 44334 - 447
149SERSERPHEPHEKK3 - 4037 - 407
249SERSERPHEPHESS3 - 4037 - 407
150SERSERPHEPHEKK3 - 4037 - 407
250SERSERPHEPHEaAA3 - 4037 - 407
151SERSERPHEPHEKK3 - 4037 - 407
251SERSERPHEPHEiIA3 - 4037 - 407
152SERSERPHEPHEKK3 - 4037 - 407
252SERSERPHEPHEqQA3 - 4037 - 407
153METMETGLNGLNLL1 - 4065 - 410
253METMETGLNGLNTT1 - 4065 - 410
154METMETGLNGLNLL1 - 4065 - 410
254METMETGLNGLNbBA1 - 4065 - 410
155METMETGLNGLNLL1 - 4065 - 410
255METMETGLNGLNjJA1 - 4065 - 410
156METMETGLNGLNLL1 - 4065 - 410
256METMETGLNGLNrRA1 - 4065 - 410
157SERSERILEILEMM24 - 33315 - 324
257SERSERILEILEUU24 - 33315 - 324
158SERSERILEILEMM24 - 33315 - 324
258SERSERILEILEcCA24 - 33315 - 324
159SERSERILEILEMM24 - 33315 - 324
259SERSERILEILEkKA24 - 33315 - 324
160SERSERILEILEMM24 - 33315 - 324
260SERSERILEILEsSA24 - 33315 - 324
161SERSERGLNGLNNN29 - 31633 - 320
261SERSERGLNGLNVV29 - 31633 - 320
162SERSERGLNGLNNN29 - 31633 - 320
262SERSERGLNGLNdDA29 - 31633 - 320
163SERSERGLNGLNNN29 - 31633 - 320
263SERSERGLNGLNlLA29 - 31633 - 320
164SERSERGLNGLNNN29 - 31633 - 320
264SERSERGLNGLNtTA29 - 31633 - 320
165THRTHRASNASNOO8 - 21512 - 219
265THRTHRASNASNWW8 - 21512 - 219
166THRTHRASNASNOO8 - 21512 - 219
266THRTHRASNASNeEA8 - 21512 - 219
167THRTHRASNASNOO8 - 21512 - 219
267THRTHRASNASNmMA8 - 21512 - 219
168THRTHRASNASNOO8 - 21512 - 219
268THRTHRASNASNuUA8 - 21512 - 219
169PHEPHEASNASNPP11 - 20915 - 213
269PHEPHEASNASNXX11 - 20915 - 213
170PHEPHEASNASNPP11 - 20915 - 213
270PHEPHEASNASNfFA11 - 20915 - 213
171PHEPHEASNASNPP11 - 20915 - 213
271PHEPHEASNASNnNA11 - 20915 - 213
172PHEPHEASNASNPP11 - 20915 - 213
272PHEPHEASNASNvVA11 - 20915 - 213
173VALVALPROPROQQ77 - 50530 - 458
273VALVALPROPROYY77 - 50530 - 458
174VALVALPROPROQQ77 - 50530 - 458
274VALVALPROPROgGA77 - 50530 - 458
175VALVALPROPROQQ77 - 50530 - 458
275VALVALPROPROoOA77 - 50530 - 458
176VALVALALAALARR30 - 44334 - 447
276VALVALALAALAZZ30 - 44334 - 447
177VALVALALAALARR30 - 44334 - 447
277VALVALALAALAhHA30 - 44334 - 447
178VALVALALAALARR30 - 44334 - 447
278VALVALALAALApPA30 - 44334 - 447
179SERSERPHEPHESS3 - 4037 - 407
279SERSERPHEPHEaAA3 - 4037 - 407
180SERSERPHEPHESS3 - 4037 - 407
280SERSERPHEPHEiIA3 - 4037 - 407
181SERSERPHEPHESS3 - 4037 - 407
281SERSERPHEPHEqQA3 - 4037 - 407
182METMETGLNGLNTT1 - 4065 - 410
282METMETGLNGLNbBA1 - 4065 - 410
183METMETGLNGLNTT1 - 4065 - 410
283METMETGLNGLNjJA1 - 4065 - 410
184METMETGLNGLNTT1 - 4065 - 410
284METMETGLNGLNrRA1 - 4065 - 410
185SERSERILEILEUU24 - 33315 - 324
285SERSERILEILEcCA24 - 33315 - 324
186SERSERILEILEUU24 - 33315 - 324
286SERSERILEILEkKA24 - 33315 - 324
187SERSERILEILEUU24 - 33315 - 324
287SERSERILEILEsSA24 - 33315 - 324
188SERSERGLNGLNVV29 - 31633 - 320
288SERSERGLNGLNdDA29 - 31633 - 320
189SERSERGLNGLNVV29 - 31633 - 320
289SERSERGLNGLNlLA29 - 31633 - 320
190SERSERGLNGLNVV29 - 31633 - 320
290SERSERGLNGLNtTA29 - 31633 - 320
191THRTHRASNASNWW8 - 21512 - 219
291THRTHRASNASNeEA8 - 21512 - 219
192THRTHRASNASNWW8 - 21512 - 219
292THRTHRASNASNmMA8 - 21512 - 219
193THRTHRASNASNWW8 - 21512 - 219
293THRTHRASNASNuUA8 - 21512 - 219
194PHEPHEASNASNXX11 - 20915 - 213
294PHEPHEASNASNfFA11 - 20915 - 213
195PHEPHEASNASNXX11 - 20915 - 213
295PHEPHEASNASNnNA11 - 20915 - 213
196PHEPHEASNASNXX11 - 20915 - 213
296PHEPHEASNASNvVA11 - 20915 - 213
197VALVALPROPROYY77 - 50530 - 458
297VALVALPROPROgGA77 - 50530 - 458
198VALVALPROPROYY77 - 50530 - 458
298VALVALPROPROoOA77 - 50530 - 458
199VALVALALAALAZZ30 - 44334 - 447
299VALVALALAALAhHA30 - 44334 - 447
1100VALVALALAALAZZ30 - 44334 - 447
2100VALVALALAALApPA30 - 44334 - 447
1101SERSERPHEPHEaAA3 - 4037 - 407
2101SERSERPHEPHEiIA3 - 4037 - 407
1102SERSERPHEPHEaAA3 - 4037 - 407
2102SERSERPHEPHEqQA3 - 4037 - 407
1103METMETGLNGLNbBA1 - 4065 - 410
2103METMETGLNGLNjJA1 - 4065 - 410
1104METMETGLNGLNbBA1 - 4065 - 410
2104METMETGLNGLNrRA1 - 4065 - 410
1105SERSERILEILEcCA24 - 33315 - 324
2105SERSERILEILEkKA24 - 33315 - 324
1106SERSERILEILEcCA24 - 33315 - 324
2106SERSERILEILEsSA24 - 33315 - 324
1107SERSERGLNGLNdDA29 - 31633 - 320
2107SERSERGLNGLNlLA29 - 31633 - 320
1108SERSERGLNGLNdDA29 - 31633 - 320
2108SERSERGLNGLNtTA29 - 31633 - 320
1109THRTHRASNASNeEA8 - 21512 - 219
2109THRTHRASNASNmMA8 - 21512 - 219
1110THRTHRASNASNeEA8 - 21512 - 219
2110THRTHRASNASNuUA8 - 21512 - 219
1111PHEPHEASNASNfFA11 - 20915 - 213
2111PHEPHEASNASNnNA11 - 20915 - 213
1112PHEPHEASNASNfFA11 - 20915 - 213
2112PHEPHEASNASNvVA11 - 20915 - 213
1113VALVALPROPROgGA77 - 50530 - 458
2113VALVALPROPROoOA77 - 50530 - 458
1114VALVALALAALAhHA30 - 44334 - 447
2114VALVALALAALApPA30 - 44334 - 447
1115SERSERPHEPHEiIA3 - 4037 - 407
2115SERSERPHEPHEqQA3 - 4037 - 407
1116METMETGLNGLNjJA1 - 4065 - 410
2116METMETGLNGLNrRA1 - 4065 - 410
1117SERSERILEILEkKA24 - 33315 - 324
2117SERSERILEILEsSA24 - 33315 - 324
1118SERSERGLNGLNlLA29 - 31633 - 320
2118SERSERGLNGLNtTA29 - 31633 - 320
1119THRTHRASNASNmMA8 - 21512 - 219
2119THRTHRASNASNuUA8 - 21512 - 219
1120PHEPHEASNASNnNA11 - 20915 - 213
2120PHEPHEASNASNvVA11 - 20915 - 213

NCS ensembles :
ID
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120

-
Components

-
COP9 signalosome complex subunit ... , 8 types, 48 molecules AIQYgoBJRZhpCKSaiqDLTbjrEMUcks...

#1: Protein
COP9 signalosome complex subunit 1 / / Signalosome subunit 1 / G protein pathway suppressor 1 / GPS-1 / JAB1-containing signalosome ...Signalosome subunit 1 / G protein pathway suppressor 1 / GPS-1 / JAB1-containing signalosome subunit 1 / Protein MFH


Mass: 54222.805 Da / Num. of mol.: 6 / Fragment: UNP residues 52-527
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: GPS1, COPS1, CSN1 / Cell line (production host): High Five / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q13098
#2: Protein
COP9 signalosome complex subunit 2 / / Signalosome subunit 2 / Alien homolog / JAB1-containing signalosome subunit 2 / Thyroid receptor- ...Signalosome subunit 2 / Alien homolog / JAB1-containing signalosome subunit 2 / Thyroid receptor-interacting protein 15 / TRIP-15


Mass: 51992.922 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: COPS2, CSN2, TRIP15 / Cell line (production host): High Five / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: P61201
#3: Protein
COP9 signalosome complex subunit 3 / / Signalosome subunit 3 / JAB1-containing signalosome subunit 3


Mass: 48252.355 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: COPS3, CSN3 / Cell line (production host): High Five / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q9UNS2
#4: Protein
COP9 signalosome complex subunit 4 / / Signalosome subunit 4 / JAB1-containing signalosome subunit 4


Mass: 46651.039 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: COPS4, CSN4 / Cell line (production host): High Five / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q9BT78
#5: Protein
COP9 signalosome complex subunit 5 / / Signalosome subunit 5 / Jun activation domain-binding protein 1


Mass: 36641.594 Da / Num. of mol.: 6 / Fragment: UNP residues 14-334
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: COPS5, CSN5, JAB1 / Cell line (production host): High Five / Production host: Trichoplusia ni (cabbage looper)
References: UniProt: Q92905, Hydrolases; Acting on peptide bonds (peptidases)
#6: Protein
COP9 signalosome complex subunit 6 / / Signalosome subunit 6 / JAB1-containing signalosome subunit 6 / MOV34 homolog / Vpr-interacting protein / hVIP


Mass: 36531.746 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: COPS6, CSN6, HVIP / Cell line (production host): High Five / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q7L5N1
#7: Protein
COP9 signalosome complex subunit 7a / / Signalosome subunit 7a / Dermal papilla-derived protein 10 / JAB1-containing signalosome subunit 7a


Mass: 24649.197 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: COPS7A, CSN7A, DERP10 / Cell line (production host): High Five / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q9UBW8
#8: Protein
COP9 signalosome complex subunit 8 / / Signalosome subunit 8 / COP9 homolog / hCOP9 / JAB1-containing signalosome subunit 8


Mass: 23573.895 Da / Num. of mol.: 6
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: COPS8, CSN8 / Cell line (production host): High Five / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q99627

-
Non-polymers , 1 types, 6 molecules

#9: Chemical
ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: Zn

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 3.73 Å3/Da / Density % sol: 67.01 %
Crystal growTemperature: 273 K / Method: vapor diffusion, hanging drop
Details: CRYSTALS GROWN BY VAPOR DIFFUSION BY MIXING 9.3 MG/ML PROTEIN IN 50 MM HEPES PH 7.4, 200 MM NACL, 2 MM EQUALLY WITH 12% PEG 6000, 100 MM TRISODIUM CITRATE PH 5.4, 0.1 M LI2SO4.
PH range: 5.4-7.4

-
Data collection

DiffractionMean temperature: 100 K
Diffraction sourceSource: SYNCHROTRON / Site: SLS / Beamline: X10SA / Wavelength: 1.0004 Å
DetectorType: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Jun 20, 2011
RadiationMonochromator: Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1.0004 Å / Relative weight: 1
ReflectionResolution: 5.5→49.64 Å / Num. obs: 79098 / % possible obs: 94.9 % / Redundancy: 1.9 % / CC1/2: 0.997 / Rmerge(I) obs: 0.072 / Rpim(I) all: 0.065 / Net I/σ(I): 5.4 / Num. measured all: 153156
Reflection shell

Diffraction-ID: 1 / Redundancy: 1.9 % / Rejects: 0

Resolution (Å)Rmerge(I) obsMean I/σ(I) obsNum. measured allNum. unique allCC1/2Rpim(I) all% possible all
5.5-5.611.3290.6821642920.1661.20588.7
28.04-49.640.02520.29605040.9980.02378.8

-
Phasing

PhasingMethod: molecular replacement
Phasing MRModel details: Phaser MODE: MR_AUTO
Highest resolutionLowest resolution
Rotation9.69 Å335.49 Å
Translation9.69 Å335.49 Å

-
Processing

Software
NameVersionClassification
Aimless0.3.11data scaling
XDSJanuary 10, 2014data reduction
PHASER2.5.6phasing
REFMAC5.8.0073refinement
PDB_EXTRACT3.15data extraction
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 4d10 chains A-H
Resolution: 5.5→49.64 Å / Cor.coef. Fo:Fc: 0.928 / Cor.coef. Fo:Fc free: 0.893 / SU B: 497.045 / SU ML: 2.032 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R Free: 1.987 / Stereochemistry target values: MAXIMUM LIKELIHOOD
Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
RfactorNum. reflection% reflectionSelection details
Rfree0.2821 1996 2.5 %RANDOM
Rwork0.2542 78769 --
obs0.2548 78769 96.92 %-
Solvent computationIon probe radii: 1 Å / Shrinkage radii: 1 Å / VDW probe radii: 1.2 Å / Solvent model: MASK
Displacement parametersBiso max: 287.26 Å2 / Biso mean: 125.221 Å2 / Biso min: 58.06 Å2
Baniso -1Baniso -2Baniso -3
1-7.74 Å23.59 Å2-3.95 Å2
2--7.98 Å2-5.52 Å2
3----22.28 Å2
Refinement stepCycle: final / Resolution: 5.5→49.64 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms124422 0 6 0 124428
Biso mean--130.24 --
Num. residues----15576
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0050.019126689
X-RAY DIFFRACTIONr_bond_other_d0.0020.02122700
X-RAY DIFFRACTIONr_angle_refined_deg0.8391.964171132
X-RAY DIFFRACTIONr_angle_other_deg0.7453282156
X-RAY DIFFRACTIONr_dihedral_angle_1_deg5.567515492
X-RAY DIFFRACTIONr_dihedral_angle_2_deg33.21824.786000
X-RAY DIFFRACTIONr_dihedral_angle_3_deg15.2721523304
X-RAY DIFFRACTIONr_dihedral_angle_4_deg13.04515702
X-RAY DIFFRACTIONr_chiral_restr0.0470.219332
X-RAY DIFFRACTIONr_gen_planes_refined0.0040.02142824
X-RAY DIFFRACTIONr_gen_planes_other0.0020.0228854
Refine LS restraints NCS

Refine-ID: X-RAY DIFFRACTION / Type: interatomic distance / Weight position: 0.05

Ens-IDDom-IDAuth asym-IDNumberRms dev position (Å)
11A258360
12I258360
21A257840.01
22Q257840.01
31A257790.01
32Y257790.01
41A258240
42g258240
51A258270
52o258270
61B256670
62J256670
71B256570
72R256570
81B256300.01
82Z256300.01
91B256190.01
92h256190.01
101B256380
102p256380
111C244840
112K244840
121C244850
122S244850
131C244850
132a244850
141C244790
142i244790
151C244790
152q244790
161D248180.05
162L248180.05
171D247360.05
172T247360.05
181D245750.06
182b245750.06
191D245240.06
192j245240.06
201D245330.06
202r245330.06
211E174000
212M174000
221E173990.01
222U173990.01
231E173990
232c173990
241E173870
242k173870
251E173870
252s173870
261F158070.02
262N158070.02
271F158270
272V158270
281F158130.01
282d158130.01
291F158190
292l158190
301F158170
302t158170
311G124610
312O124610
321G124620
322W124620
331G124580
332e124580
341G124550
342m124550
351G124560
352u124560
361H103230
362P103230
371H103210
372X103210
381H103200
382f103200
391H103230
392n103230
401H103200
402v103200
411I257900.01
412Q257900.01
421I257800.01
422Y257800.01
431I258260
432g258260
441I258270
442o258270
451J256600
452R256600
461J256340.01
462Z256340.01
471J256170.01
472h256170.01
481J256360.01
482p256360.01
491K244870
492S244870
501K244840
502a244840
511K244780
512i244780
521K244810
522q244810
531L247120.05
532T247120.05
541L245770.06
542b245770.06
551L245250.06
552j245250.06
561L245860.06
562r245860.06
571M173960.01
572U173960.01
581M173940
582c173940
591M173820
592k173820
601M173840
602s173840
611N158140.02
612V158140.02
621N157950.02
622d157950.02
631N158060.02
632l158060.02
641N158040.02
642t158040.02
651O124590
652W124590
661O124560
662e124560
671O124530
672m124530
681O124540
682u124540
691P103270
692X103270
701P103230
702f103230
711P103250
712n103250
721P103220
722v103220
731Q258280
732Y258280
741Q257770.01
742g257770.01
751Q257770.01
752o257770.01
761R256190.01
762Z256190.01
771R256090.01
772h256090.01
781R256280.01
782p256280.01
791S244790
792a244790
801S244800
802i244800
811S244830
812q244830
821T245140.06
822b245140.06
831T244400.07
832j244400.07
841T245040.06
842r245040.06
851U173960.01
852c173960.01
861U173850.01
862k173850.01
871U173850.01
872s173850.01
881V158150.01
882d158150.01
891V158220
892l158220
901V158200
902t158200
911W124580
912e124580
921W124550
922m124550
931W124570
932u124570
941X103210
942f103210
951X103250
952n103250
961X103220
962v103220
971Y257810.01
972g257810.01
981Y257840.01
982o257840.01
991Z256530
992h256530
1001Z256490.01
1002p256490.01
1011a244780
1012i244780
1021a244760
1022q244760
1031b243650.07
1032j243650.07
1041b244190.07
1042r244190.07
1051c173920
1052k173920
1061c173910
1062s173910
1071d158120.01
1072l158120.01
1081d158100.01
1082t158100.01
1091e124560
1092m124560
1101e124570
1102u124570
1111f103200
1112n103200
1121f103190
1122v103190
1131g258310
1132o258310
1141h256610.01
1142p256610.01
1151i244840
1152q244840
1161j246570.06
1162r246570.06
1171k174100
1172s174100
1181l158300
1182t158300
1191m124570
1192u124570
1201n103220
1202v103220
LS refinement shellResolution: 5.5→5.643 Å / Total num. of bins used: 20
RfactorNum. reflection% reflection
Rfree0.462 154 -
Rwork0.435 5912 -
all-6066 -
obs--98.63 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
14.0260.51030.32870.75960.07351.84290.0231-1.32740.10550.42220.1119-0.1073-0.38510.0072-0.1350.42380.21760.15780.63770.06721.0919-62.95832.33453.9567
21.42111.9919-0.49093.7899-0.37140.7893-0.3958-0.0812-0.3983-0.10220.2666-0.22620.7672-0.42940.12920.8125-0.28670.25680.89320.17762.0123-84.0256-53.785124.3398
33.1145-3.79992.36976.2672-1.99522.3189-0.012-0.0247-0.253-0.03890.17850.64720.01380.0739-0.16651.16260.37410.38730.7629-0.20051.8671-39.8016-96.02359.54
41.2958-2.6571-0.6896.57321.42840.6205-0.1879-0.26460.19440.36920.2458-1.15990.5540.3797-0.05790.87940.41180.01360.7124-0.22131.9056-45.4035-48.169619.208
52.10840.0668-1.68952.66420.73794.0591-0.0111-1.01520.18510.41890.19260.2484-0.5627-0.9193-0.18150.26510.54980.0461.8290.14341.3645-104.03845.06749.6803
62.0606-0.83151.06961.5631.21142.77020.73650.5713-0.0271-0.5209-0.1176-0.36540.2420.5248-0.61891.72560.17520.07872.79730.24982.684625.6634-23.092315.6859
76.9406-2.58820.91882.99491.01941.44050.08430.3272-0.5374-0.03390.0059-0.1591-0.10.9013-0.09010.4991-0.027-0.05451.57560.25331.1338-18.9917-9.339827.0964
80.750.25310.89422.8016-0.55952.76160.1159-0.6965-0.11210.4916-0.1909-0.3235-0.43030.15990.0750.2132-0.3590.04571.34770.21151.5352-32.2289-12.463766.8289
96.38153.7484-2.29866.55021.793.50610.2222-1.01960.3712-0.3141-0.4099-0.116-0.92180.51760.18770.9666-0.0126-0.28820.45470.29741.6242-28.908220.837127.0275
100.6724-0.82531.48412.0298-0.41545.5128-0.2752-0.33050.1058-0.22890.5291-0.2783-1.5087-0.2188-0.25391.11080.08050.34170.71030.01731.6167-90.050920.039825.2459
113.7831-0.4388-0.73970.65060.46641.74780.14031.0303-0.3989-0.29870.0439-0.02330.55210.1182-0.18420.6767-0.0764-0.07410.66270.10071.121512.2252-58.263272.6149
121.8542-2.21520.44574.3765-0.43290.8203-0.14840.08770.3978-0.04050.05940.0685-0.8083-0.36010.0890.89470.3553-0.29960.69350.20011.7846-8.4726-2.8795102.7219
131.0616-0.2229-1.02276.5592.0491.6802-0.35140.18630.144-0.36630.47870.1094-0.21910.1158-0.12741.2383-0.3097-0.17080.79940.06451.641835.801139.5061117.1577
141.93681.3277-0.46984.61680.99050.9929-0.338-0.07070.1376-0.23550.7359-1.3941-0.48460.5636-0.39780.8399-0.2533-0.17340.74510.06051.98630.1374-8.5136107.8234
153.64250.10872.40982.10190.75232.46510.47970.6503-0.2382-0.0965-0.32780.24780.7879-0.5651-0.15180.4839-0.56780.05071.39030.19811.5111-28.9826-60.753577.0195
160.3158-0.0925-1.13560.08560.37495.27260.10650.14470.2470.1938-0.0336-0.2970.28650.3663-0.07291.331-0.1105-0.03921.60240.26182.2959101.0477-33.3662110.7539
172.8661.12470.26531.3881.38063.0879-0.25560.54810.2767-0.07140.16790.00030.10861.11770.08780.21390.02790.10591.08180.47781.531356.2352-47.163699.5608
184.0346-0.01661.54732.7509-0.05383.12060.00181.3496-0.106-0.56880.0871-0.27270.18120.7462-0.08890.1590.05610.2311.46180.50091.137342.8809-43.325659.7694
192.2971-3.08790.39177.12690.90174.38440.06590.1985-0.6396-0.44330.21610.23831.35731.0237-0.2820.78830.3134-0.14430.55950.1351.375146.2399-77.332299.2066
200.47370.41650.20020.5321-0.45876.4082-0.01910.4123-0.5848-0.05750.1751-0.48591.09350.6082-0.1560.7062-0.1815-0.31140.8324-0.00371.9123-15.2409-76.3671101.3606
211.27631.6663-0.15562.4896-0.28011.2510.5629-0.261-0.05940.9989-0.2196-0.29210.43290.253-0.34330.8211-0.0504-0.25170.4938-0.0611.53-46.0932-75.638-58.6028
221.9148-2.356-0.18334.76620.10720.57020.27690.07510.3258-0.1488-0.26210.2379-0.6525-0.4098-0.01481.07910.1951-0.13890.6144-0.24611.6936-82.9848-30.0204-89.0518
236.85010.12730.62882.5331-0.09230.29770.1417-0.21280.0728-0.2187-0.25870.1407-0.0707-0.16440.1170.8095-0.0179-0.05261.0374-0.04351.0492-142.0409-47.2102-103.168
247.8453-0.05861.82940.3919-0.47821.39020.4141-0.2926-0.7538-0.22520.11480.47340.2632-0.7217-0.52890.69870.0655-0.05890.70140.00031.5025-97.7932-66.4472-94.066
252.23261.13521.38872.96971.71153.48970.3794-0.28440.05270.8255-0.312-0.421-0.07990.8447-0.06740.4558-0.41420.15960.63870.01451.5032-23.1266-41.3157-63.0389
262.06550.2419-1.03941.10040.21684.00130.09150.3465-0.63180.19070.23060.44040.88410.4103-0.32211.3738-0.25080.08471.22350.11041.9085-111.5177-140.7629-96.8307
273.70831.13721.03352.2037-0.21440.65310.4128-0.32790.120.4435-0.40610.32410.4806-0.0763-0.00671.0779-0.19460.22770.39750.07881.2879-77.58-108.441-85.5799
283.0280.17340.5483.32771.14171.31010.3564-0.8449-0.18971.2221-0.22190.00950.43010.0855-0.13451.7247-0.5810.34410.5410.1491.1699-74.7427-94.4136-46.1197
291.3437-1.64930.95242.9878-1.27290.88890.27690.685-0.17640.5223-0.7-0.80690.54090.50610.42311.77390.3415-0.00740.3933-0.1842.075-46.5846-114.8797-84.7352
301.0241-0.1452-1.62340.2651-0.56586.69170.0987-0.0259-0.1032-0.0794-0.1617-0.33890.85631.04680.06290.69620.242-0.37110.4952-0.39121.8661-16.3561-61.2075-87.238
311.8680.8793-0.01222.94140.3491.78220.06040.37120.0007-0.62720.12390.1384-0.455-0.5657-0.18430.55420.10130.12760.27360.18151.2901-60.835319.7111-39.9331
325.67130.1512-0.62430.3385-0.33920.9952-0.1013-0.138-0.4550.0107-0.0458-0.2235-0.10140.70920.1470.3606-0.23440.17360.79510.13551.7019-0.63839.9346-12.0261
332.3657-1.36911.94645.22041.04432.81930.1502-0.0970.0996-0.1423-0.6021-0.15590.2556-0.05750.45191.36090.26410.30691.34060.42681.778213.3535-49.68343.9872
341.0057-1.91640.91523.9334-1.33631.80790.44880.1916-0.3626-0.8829-0.16060.31060.63180.7901-0.28831.04880.2736-0.12380.51970.09521.8074-24.638-20.724-6.4899
351.6158-0.0336-0.89512.7486-1.70122.04870.01950.40310.2462-0.52730.28480.2956-0.7027-0.3581-0.30432.3423-0.17910.20580.1447-0.01151.7445-43.29857.0055-35.9577
360.11520.0930.37810.29340.72032.5116-0.3275-0.2012-0.1284-0.0683-0.32270.6404-0.1045-0.28530.65022.89560.29580.13711.8903-0.37893.0458-70.4041-71.5909-4.9651
373.50631.442.16397.24831.47052.35260.69140.3888-0.98250.5939-0.1563-0.57861.2874-0.4272-0.53511.152-0.207-0.07010.9881-0.07771.4301-69.3369-24.3841-12.9313
384.82691.1563-1.45843.43810.31333.7276-0.26410.5988-0.5197-0.31410.20390.08360.1266-0.19580.06030.3791-0.25260.08810.30030.03311.0339-62.9143-14.4239-52.4992
398.42140.9073-0.64472.7857-2.43213.3112-0.48180.0431-0.084-0.34720.48540.63-0.2368-0.6428-0.00360.60030.01530.19040.80810.05021.262-92.6327-1.1271-11.8548
402.62-1.3932-0.370.84540.47141.0554-0.1942-0.91610.1699-0.30630.2392-0.1637-0.7688-0.9788-0.04511.90120.5960.47861.67280.04761.7631-62.212951.8897-10.6103
412.5759-1.1155-0.46961.59920.05632.4631-0.3663-0.49490.36740.79190.49850.14680.4747-0.2978-0.13220.66510.0250.23420.42320.2911.70514.5154-76.6248166.3684
423.5998-0.20121.20171.2671-0.01531.2384-0.1083-0.31560.10850.23110.3241-0.5083-0.26510.5966-0.21570.253-0.048-0.10110.81410.0281.984274.8048-66.7351139.0808
433.229-0.7177-0.22192.34652.12552.19720.02180.62050.335-0.1419-0.76320.2587-0.4255-0.28480.74141.3746-0.0798-0.36961.44790.26511.842988.6057-7.0404122.1064
442.50962.91690.71274.93461.6951.41930.1807-0.2720.0260.59690.0999-0.3132-0.45280.6572-0.28060.974-0.1808-0.01530.86820.16951.476151.1136-35.899133.2783
452.78740.6245-0.48632.3984-0.86632.3777-0.354-0.4129-0.56560.56820.41320.02971.24310.0211-0.05921.42730.27920.31190.19770.26761.734630.2347-114.2366161.5499
461.06320.2725-0.77420.103-0.23210.914-0.2270.26950.27470.1506-0.06060.2842-0.5620.43620.28763.0091-0.7625-0.25782.4111-0.0863.212413.487315.1326137.6835
471.8549-1.0855-0.73025.05472.0771.33480.0698-0.16080.29950.0860.0213-0.212-0.4148-0.0404-0.09110.77410.02530.20660.90710.17261.07027.1079-32.1189140.3216
483.2419-0.41380.20762.4063-0.66531.3537-0.1141-0.66930.16960.63580.35680.0598-0.5545-0.4747-0.24270.98480.57580.38440.5568-0.07731.376814.2611-42.1513178.0618
497.85280.0071-0.73113.0189-0.70012.3028-0.1762-0.2358-0.20970.22380.040.43260.1794-0.61390.13620.31770.0728-0.0290.8990.27590.9861-17.1032-55.0969138.5665
501.5573-0.9831-2.14751.01332.21795.1203-0.05640.6499-0.14150.3149-0.17820.24350.8983-0.82490.23461.1672-0.2751-0.17070.84690.44961.648412.0595-107.6657136.1694
510.5095-0.7639-0.29882.60360.68323.35360.22280.40540.1843-0.7969-0.1530.0502-0.04550.5758-0.06980.31970.02310.28960.67380.03621.623329.055618.9228183.1313
521.62330.83940.06913.22620.93741.48720.33440.0815-0.3756-0.3353-0.21870.24590.818-0.4359-0.11571.0625-0.23070.06620.1347-0.01581.7107-9.7513-28.2205210.593
530.07530.5380.04624.15520.230.08060.0592-0.11440.06490.2504-0.3634-0.08880.1053-0.0660.30421.2126-0.1674-0.09271.9008-0.26981.627-68.0436-10.6441227.2132
545.2361-0.9048-0.60360.396-0.29751.32530.01150.0989-0.3403-0.34270.19740.09680.1749-0.9505-0.20890.73860.03910.110.7801-0.01171.4194-24.42767.6805216.2098
552.37750.6806-1.14832.57990.2491.89350.0130.3333-0.0882-0.877-0.2075-0.59270.54580.6160.19450.82080.68980.26831.00150.18691.68653.6132-13.6218188.0109
561.0701-0.00841.71510.05280.0162.9283-0.0858-0.4719-0.2107-0.23-0.13010.27180.1112-1.05790.2161.88270.0633-0.25072.795-0.07783.0252-50.062465.7803210.4701
573.8792-2.25740.75986.6113-3.38614.79120.26720.1036-0.0614-0.66580.21810.896-0.4353-0.8233-0.48530.9751-0.11030.51940.41590.17241.58-5.645447.8873209.059
581.99860.7789-0.13083.32451.00943.08750.14920.42090.0949-1.0071-0.0190.2133-0.8905-0.1857-0.13021.2460.37790.19670.24160.34091.4146-0.659536.4809171.4766
595.29992.8568-0.87375.7255-1.21011.5457-0.10480.06370.7244-0.0133-0.1372-0.2691-0.94760.3310.2421.0056-0.40180.33040.261-0.19181.396626.297857.2004210.8281
602.0083-0.4753-0.92561.6127-0.09813.27360.5421-0.95770.0042-0.2564-0.542-0.5071-0.3941.6508-0.00010.3819-0.10380.38572.1544-0.02931.757657.09735.536213.2368
Refinement TLS group
IDRefine-IDRefine TLS-IDAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1A464 - 505
2X-RAY DIFFRACTION1B412 - 443
3X-RAY DIFFRACTION1C346 - 403
4X-RAY DIFFRACTION1D367 - 406
5X-RAY DIFFRACTION1E250 - 333
6X-RAY DIFFRACTION1F217 - 316
7X-RAY DIFFRACTION1G166 - 216
8X-RAY DIFFRACTION1H194 - 217
9X-RAY DIFFRACTION2A77 - 463
10X-RAY DIFFRACTION3B30 - 180
11X-RAY DIFFRACTION4B192 - 411
12X-RAY DIFFRACTION5C3 - 345
13X-RAY DIFFRACTION6D1 - 179
14X-RAY DIFFRACTION7D180 - 366
15X-RAY DIFFRACTION8E24 - 249
16X-RAY DIFFRACTION8F29 - 216
17X-RAY DIFFRACTION9G8 - 165
18X-RAY DIFFRACTION10H11 - 167
19X-RAY DIFFRACTION11I464 - 505
20X-RAY DIFFRACTION11J412 - 443
21X-RAY DIFFRACTION11K346 - 403
22X-RAY DIFFRACTION11L367 - 406
23X-RAY DIFFRACTION11M250 - 333
24X-RAY DIFFRACTION11N217 - 316
25X-RAY DIFFRACTION11O166 - 216
26X-RAY DIFFRACTION11P194 - 217
27X-RAY DIFFRACTION12I77 - 463
28X-RAY DIFFRACTION13J30 - 180
29X-RAY DIFFRACTION14J192 - 411
30X-RAY DIFFRACTION15K3 - 345
31X-RAY DIFFRACTION16L1 - 180
32X-RAY DIFFRACTION17L181 - 366
33X-RAY DIFFRACTION18M24 - 249
34X-RAY DIFFRACTION18N29 - 216
35X-RAY DIFFRACTION19O8 - 165
36X-RAY DIFFRACTION20P11 - 167
37X-RAY DIFFRACTION21Q464 - 505
38X-RAY DIFFRACTION21R412 - 443
39X-RAY DIFFRACTION21S346 - 403
40X-RAY DIFFRACTION21T367 - 406
41X-RAY DIFFRACTION21U250 - 333
42X-RAY DIFFRACTION21V217 - 316
43X-RAY DIFFRACTION21W166 - 216
44X-RAY DIFFRACTION21X194 - 217
45X-RAY DIFFRACTION22Q77 - 463
46X-RAY DIFFRACTION23R30 - 190
47X-RAY DIFFRACTION24R192 - 411
48X-RAY DIFFRACTION25S3 - 345
49X-RAY DIFFRACTION26T1 - 180
50X-RAY DIFFRACTION27T181 - 366
51X-RAY DIFFRACTION28U24 - 249
52X-RAY DIFFRACTION28V29 - 216
53X-RAY DIFFRACTION29W8 - 165
54X-RAY DIFFRACTION30X11 - 167
55X-RAY DIFFRACTION31Y464 - 505
56X-RAY DIFFRACTION31Z412 - 443
57X-RAY DIFFRACTION31a346 - 403
58X-RAY DIFFRACTION31b367 - 406
59X-RAY DIFFRACTION31c250 - 333
60X-RAY DIFFRACTION31d217 - 316
61X-RAY DIFFRACTION31e166 - 216
62X-RAY DIFFRACTION31f194 - 217
63X-RAY DIFFRACTION32Y77 - 463
64X-RAY DIFFRACTION33Z30 - 180
65X-RAY DIFFRACTION34Z192 - 411
66X-RAY DIFFRACTION35a3 - 345
67X-RAY DIFFRACTION36b1 - 180
68X-RAY DIFFRACTION37b181 - 366
69X-RAY DIFFRACTION38c24 - 249
70X-RAY DIFFRACTION38d29 - 216
71X-RAY DIFFRACTION39e8 - 165
72X-RAY DIFFRACTION40f11 - 167
73X-RAY DIFFRACTION41g464 - 505
74X-RAY DIFFRACTION41h412 - 443
75X-RAY DIFFRACTION41i346 - 403
76X-RAY DIFFRACTION41j367 - 406
77X-RAY DIFFRACTION41k250 - 333
78X-RAY DIFFRACTION41l217 - 316
79X-RAY DIFFRACTION41m166 - 216
80X-RAY DIFFRACTION41n194 - 217
81X-RAY DIFFRACTION42g77 - 463
82X-RAY DIFFRACTION43h30 - 180
83X-RAY DIFFRACTION44h192 - 411
84X-RAY DIFFRACTION45i3 - 345
85X-RAY DIFFRACTION46j1 - 180
86X-RAY DIFFRACTION47j181 - 366
87X-RAY DIFFRACTION48k24 - 249
88X-RAY DIFFRACTION48l29 - 216
89X-RAY DIFFRACTION49m8 - 165
90X-RAY DIFFRACTION50n11 - 167
91X-RAY DIFFRACTION51o464 - 505
92X-RAY DIFFRACTION51p412 - 443
93X-RAY DIFFRACTION51q346 - 403
94X-RAY DIFFRACTION51r367 - 406
95X-RAY DIFFRACTION51s250 - 333
96X-RAY DIFFRACTION51t217 - 316
97X-RAY DIFFRACTION51u166 - 216
98X-RAY DIFFRACTION51v194 - 217
99X-RAY DIFFRACTION52o77 - 463
100X-RAY DIFFRACTION53p30 - 180
101X-RAY DIFFRACTION54p192 - 411
102X-RAY DIFFRACTION55q3 - 345
103X-RAY DIFFRACTION56r1 - 180
104X-RAY DIFFRACTION57r181 - 366
105X-RAY DIFFRACTION58s24 - 249
106X-RAY DIFFRACTION58t29 - 216
107X-RAY DIFFRACTION59u8 - 165
108X-RAY DIFFRACTION60v11 - 167

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