- PDB-4umk: The complex of Spo0J and parS DNA in chromosomal partition system -
+
Open data
ID or keywords:
Loading...
-
Basic information
Entry
Database: PDB / ID: 4umk
Title
The complex of Spo0J and parS DNA in chromosomal partition system
Components
(DNA) x 2
PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB
Keywords
DNA BINDING PROTEIN/DNA / DNA BINDING PROTEIN-DNA COMPLEX
Function / homology
Function and homology information
positive regulation of sporulation resulting in formation of a cellular spore / chromosome segregation / chromosome / DNA binding Similarity search - Function
Arc Repressor Mutant, subunit A - #2830 / ParB/Spo0J, HTH domain / HTH domain found in ParB protein / ParB/RepB/Spo0J partition protein / ParB/Sulfiredoxin domain / ParB/Sulfiredoxin / ParB-like nuclease domain / ParB/Sulfiredoxin superfamily / Arc Repressor Mutant, subunit A / Orthogonal Bundle / Mainly Alpha Similarity search - Domain/homology
A: PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB B: PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB C: PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB D: PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB W: DNA X: DNA Y: DNA Z: DNA hetero molecules
In the structure databanks used in Yorodumi, some data are registered as the other names, "COVID-19 virus" and "2019-nCoV". Here are the details of the virus and the list of structure data.
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)
EMDB accession codes are about to change! (news from PDBe EMDB page)
The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
The EM Navigator/Yorodumi systems omit the EMD- prefix.
Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator
Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.
Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi