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- PDB-4p0z: Structure of the double stranded DNA binding type IV secretion pr... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4p0z | ||||||
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Title | Structure of the double stranded DNA binding type IV secretion protein TraN from Enterococcus | ||||||
![]() | AM32 | ||||||
![]() | DNA BINDING PROTEIN / GRAM-POSITIVE / CONJUGATION / HELIX-TURN-HELIX / DSDNA BINDING | ||||||
Function / homology | isomerase activity / AM32![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Goessweiner-mohr, N. / Fercher, C. / Keller, W. | ||||||
![]() | ![]() Title: Structure of the double-stranded DNA-binding type IV secretion protein TraN from Enterococcus. Authors: Goessweiner-Mohr, N. / Eder, M. / Hofer, G. / Fercher, C. / Arends, K. / Birner-Gruenberger, R. / Grohmann, E. / Keller, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 45.5 KB | Display | ![]() |
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PDB format | ![]() | 30.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 418.4 KB | Display | ![]() |
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Full document | ![]() | 419.6 KB | Display | |
Data in XML | ![]() | 9.3 KB | Display | |
Data in CIF | ![]() | 13.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4p0yC ![]() 4pm3C ![]() 4edd C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 17787.529 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.68 Å3/Da / Density % sol: 26.69 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion / pH: 5.5 / Details: BIS-TRIS, PEG 3.350, SEEDING STOCK 1:1 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARMOSAIC 225 mm CCD / Detector: CCD / Date: Nov 28, 2010 Details: TOROIDAL MIRROR (M2) TO VERTICALLY AND HORIZONTALLY FOCUS THE BEAM AT THE SAMPLE POSITION DEMAGNIFICATION) |
Radiation | Monochromator: BARTELS MONOCROMATOR / Protocol: SINGLE WAVELENGTH / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9794 Å / Relative weight: 1 |
Reflection | Resolution: 1.35→32.684 Å / Num. obs: 25731 / % possible obs: 99.4 % / Observed criterion σ(I): 0 / Redundancy: 7.4 % / Rsym value: 0.092 / Net I/σ(I): 10.9 |
Reflection shell | Resolution: 1.35→1.42 Å / Redundancy: 7.3 % / Rmerge(I) obs: 0.629 / Mean I/σ(I) obs: 1.2 / Rsym value: 0.629 / % possible all: 98.6 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 17.72 Å2
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Refinement step | Cycle: LAST / Resolution: 1.35→32.68 Å
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Refine LS restraints |
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