- PDB-4ot8: X-ray Crystal Structure of Serine Hydroxymethyl Transferase from ... -
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Open data
ID or keywords:
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Basic information
Entry
Database: PDB / ID: 4ot8
Title
X-ray Crystal Structure of Serine Hydroxymethyl Transferase from Burkholderia cenocepacia bound to PLP and Serine
Components
Serine hydroxymethyltransferase
Keywords
TRANSFERASE / Structural Genomics / NIAID / National Institute of Allergy and Infectious Diseases / Seattle Structural Genomics Center for Infectious Disease / SSGCID / serine hydroxymethyl transferase
Function / homology
Function and homology information
glycine hydroxymethyltransferase / glycine hydroxymethyltransferase activity / glycine biosynthetic process from serine / tetrahydrofolate interconversion / pyridoxal phosphate binding / cytoplasm Similarity search - Function
Resolution: 2→42.37 Å / Cor.coef. Fo:Fc: 0.967 / Cor.coef. Fo:Fc free: 0.953 / SU ML: 0.23 / σ(F): 1.36 / Phase error: 21.97 / Stereochemistry target values: ML Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY
Rfactor
Num. reflection
% reflection
Rfree
0.2063
4895
4.98 %
Rwork
0.1654
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obs
0.1675
98244
91.38 %
all
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107749
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Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL