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- PDB-4osd: Dimer of a C-terminal fragment of phage T4 gp5 beta-helix -

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基本情報

登録情報
データベース: PDB / ID: 4osd
タイトルDimer of a C-terminal fragment of phage T4 gp5 beta-helix
要素Tail-associated lysozyme
キーワードHYDROLASE / membrane piercing / T4 gp5 / triple beta-helix / SDS resistant / donor strand exchange / fragment / membrane piercing complex / gp5.4 / gp27-gp5 complex
機能・相同性
機能・相同性情報


symbiont entry into host cell via disruption of host cell wall peptidoglycan / virus tail, baseplate / viral tail assembly / symbiont entry into host cell via disruption of host cell envelope / virus tail / symbiont entry into host / peptidoglycan catabolic process / cell wall macromolecule catabolic process / lysozyme / lysozyme activity ...symbiont entry into host cell via disruption of host cell wall peptidoglycan / virus tail, baseplate / viral tail assembly / symbiont entry into host cell via disruption of host cell envelope / virus tail / symbiont entry into host / peptidoglycan catabolic process / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to bacterium / symbiont entry into host cell / identical protein binding
類似検索 - 分子機能
Gp5, C-terminal / Gp5 C-terminal repeat (3 copies) / Protein Gp5, N-terminal OB-fold domain / Pre-baseplate central spike protein Gp5 / Gp5 N-terminal OB domain / T4-type lysozyme / : / Glycoside hydrolase, family 24 / Phage lysozyme / Lysozyme domain superfamily / Lysozyme-like domain superfamily
類似検索 - ドメイン・相同性
9-OCTADECENOIC ACID / PALMITIC ACID / STEARIC ACID / Pre-baseplate central spike protein Gp5
類似検索 - 構成要素
生物種Enterobacteria phage T4 (ファージ)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 1.96 Å
データ登録者Buth, S.A. / Leiman, P.G. / Shneider, M.M.
引用ジャーナル: Viruses / 年: 2015
タイトル: Structure and Biophysical Properties of a Triple-Stranded Beta-Helix Comprising the Central Spike of Bacteriophage T4.
著者: Buth, S.A. / Menin, L. / Shneider, M.M. / Engel, J. / Boudko, S.P. / Leiman, P.G.
履歴
登録2014年2月12日登録サイト: RCSB / 処理サイト: PDBJ
改定 1.02015年2月18日Provider: repository / タイプ: Initial release
改定 1.12017年11月22日Group: Refinement description / カテゴリ: software
改定 1.22023年2月8日Group: Database references / Derived calculations
カテゴリ: citation / citation_author ...citation / citation_author / database_2 / pdbx_struct_conn_angle / struct_conn / struct_ref_seq_dif / struct_site
Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _citation_author.name / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_asym_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id
改定 1.32023年11月8日Group: Data collection / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model
改定 1.42025年7月23日Group: Derived calculations / Structure summary
カテゴリ: chem_comp / entity ...chem_comp / entity / pdbx_entity_nonpoly / pdbx_entry_details
Item: _chem_comp.name / _chem_comp.pdbx_synonyms ..._chem_comp.name / _chem_comp.pdbx_synonyms / _entity.pdbx_description / _pdbx_entity_nonpoly.name

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Tail-associated lysozyme
B: Tail-associated lysozyme
C: Tail-associated lysozyme
D: Tail-associated lysozyme
E: Tail-associated lysozyme
F: Tail-associated lysozyme
G: Tail-associated lysozyme
H: Tail-associated lysozyme
I: Tail-associated lysozyme
J: Tail-associated lysozyme
K: Tail-associated lysozyme
L: Tail-associated lysozyme
M: Tail-associated lysozyme
N: Tail-associated lysozyme
O: Tail-associated lysozyme
P: Tail-associated lysozyme
Q: Tail-associated lysozyme
R: Tail-associated lysozyme
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)181,50542
ポリマ－176,39318
非ポリマー5,11224
水11,494638
1
A: Tail-associated lysozyme
B: Tail-associated lysozyme
C: Tail-associated lysozyme
D: Tail-associated lysozyme
E: Tail-associated lysozyme
F: Tail-associated lysozyme
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)60,51914
ポリマ－58,7986
非ポリマー1,7218
水1086
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area20770 Å2
ΔGint-55 kcal/mol
Surface area12170 Å2
2
G: Tail-associated lysozyme
H: Tail-associated lysozyme
I: Tail-associated lysozyme
J: Tail-associated lysozyme
K: Tail-associated lysozyme
L: Tail-associated lysozyme
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)60,49314
ポリマ－58,7986
非ポリマー1,6958
水1086
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area20670 Å2
ΔGint-59 kcal/mol
Surface area12230 Å2
3
M: Tail-associated lysozyme
N: Tail-associated lysozyme
O: Tail-associated lysozyme
P: Tail-associated lysozyme
Q: Tail-associated lysozyme
R: Tail-associated lysozyme
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)60,49314
ポリマ－58,7986
非ポリマー1,6958
水1086
タイプ名称対称操作数
identity operation1_555x,y,z1
Buried area20810 Å2
ΔGint-57 kcal/mol
Surface area11960 Å2
単位格子
Length a, b, c (Å)110.288, 73.786, 111.602
Angle α, β, γ (deg.)90.00, 113.39, 90.00
Int Tables number4
Space group name H-MP1211
非結晶学的対称性 (NCS)NCS oper:
IDCodeMatrixベクター
1given(1), (1), (1)
2given(-0.999662, -0.025072, 0.006947), (-0.024755, 0.998791, 0.042478), (-0.008004, 0.042292, -0.999073)-44.06715, -2.67502, 101.3411
3given(-0.98782, -0.154863, -0.015103), (-0.152092, 0.981491, -0.116377), (0.032846, -0.112662, -0.99309)0.05975, 6.58755, 109.26302
4given(-0.983524, -0.180649, -0.006829), (-0.178025, 0.974422, -0.137148), (0.03143, -0.133673, -0.990527)-8.05319, 44.22459, 105.40248

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要素

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タンパク質 , 1種, 18分子 ABCDEFGHIJKLMNOPQR

#1: タンパク質
Tail-associated lysozyme / Protein Gp5 / Gp5* / Gp5C


分子量: 9799.627 Da / 分子数: 18 / 断片: C-terminal fragment, UNP RESIDUES 484-575 / 由来タイプ: 組換発現
由来: (組換発現) Enterobacteria phage T4 (ファージ)
遺伝子: 5 / プラスミド: pEEva2, a pET23a derivative / 発現宿主: Escherichia coli (大腸菌) / 株 (発現宿主): B834 / 参照: UniProt: P16009, lysozyme

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非ポリマー , 5種, 662分子

#2: 化合物
ChemComp-ELA / Elaidic acid / 9-OCTADECENOIC ACID / エライジン酸


分子量: 282.461 Da / 分子数: 7 / 由来タイプ: 合成 / 式: C18H34O2
#3: 化合物
ChemComp-MG / MAGNESIUM ION / マグネシウムジカチオン


分子量: 24.305 Da / 分子数: 6 / 由来タイプ: 合成 / 式: Mg
#4: 化合物
ChemComp-STE / STEARIC ACID / ステアリン酸


分子量: 284.477 Da / 分子数: 6 / 由来タイプ: 合成 / 式: C18H36O2
#5: 化合物
ChemComp-PLM / PALMITIC ACID / パルミチン酸


分子量: 256.424 Da / 分子数: 5 / 由来タイプ: 合成 / 式: C16H32O2
#6: 水 ChemComp-HOH / water


分子量: 18.015 Da / 分子数: 638 / 由来タイプ: 天然 / 式: H2O

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詳細

Has protein modificationN

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.36 Å3/Da / 溶媒含有率: 47.94 %
結晶化温度: 291 K / 手法: 蒸気拡散法, ハンギングドロップ法 / pH: 8.5
詳細: 22% PEG 4000, 200mM Li2SO4, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K

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データ収集

回折平均測定温度: 100 K
放射光源由来: シンクロトロン / サイト: SLS / ビームライン: X06SA / 波長: 1 Å
検出器タイプ: DECTRIS PILATUS 6M / 検出器: PIXEL / 日付: 2012年6月19日 / 詳細: dynamically bendable mirror
放射モノクロメーター: Si(111) monochromator / プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 1 Å / 相対比: 1
反射解像度: 1.96→92.7 Å / Num. obs: 116357 / % possible obs: 96.9 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 2 / 冗長度: 2.4 % / Biso Wilson estimate: 34.3 Å2 / Rmerge(I) obs: 0.094 / Net I/σ(I): 6.8
反射 シェル解像度: 1.96→2.08 Å / 冗長度: 2.44 % / Rmerge(I) obs: 0.347 / Mean I/σ(I) obs: 2.52 / Num. unique all: 35910 / % possible all: 96.3

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解析

ソフトウェア
名称バージョン分類
PHASER位相決定
REFMAC5.7.0032精密化
XDSデータ削減
XDSデータスケーリング
精密化構造決定の手法: 分子置換
開始モデル: PDBID 4JJ2

4jj2


解像度: 1.96→59.87 Å / Cor.coef. Fo:Fc: 0.959 / Cor.coef. Fo:Fc free: 0.939 / SU B: 11.144 / SU ML: 0.151 / Isotropic thermal model: Isotropic / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 0.21 / ESU R Free: 0.193 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor反射数%反射Selection details
Rfree0.27854 5818 5 %RANDOM
Rwork0.21932 ---
all0.22229 116357 --
obs0.22229 110537 99.13 %-
溶媒の処理イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK
原子変位パラメータBiso mean: 36.086 Å2
Baniso -1Baniso -2Baniso -3
1--0.01 Å20 Å2-0.01 Å2
2--0.03 Å20 Å2
3----0.01 Å2
精密化ステップサイクル: LAST / 解像度: 1.96→59.87 Å
タンパク質核酸リガンド溶媒全体
原子数12156 0 354 638 13148
拘束条件
Refine-IDタイプDev idealDev ideal target数
X-RAY DIFFRACTIONr_bond_refined_d0.0190.0212663
X-RAY DIFFRACTIONr_bond_other_d0.0070.0212042
X-RAY DIFFRACTIONr_angle_refined_deg1.8491.94617104
X-RAY DIFFRACTIONr_angle_other_deg1.4913.0127866
X-RAY DIFFRACTIONr_dihedral_angle_1_deg6.53251670
X-RAY DIFFRACTIONr_dihedral_angle_2_deg38.5827.782487
X-RAY DIFFRACTIONr_dihedral_angle_3_deg15.083152067
X-RAY DIFFRACTIONr_dihedral_angle_4_deg19.9881518
X-RAY DIFFRACTIONr_chiral_restr0.1120.22024
X-RAY DIFFRACTIONr_gen_planes_refined0.0070.0214548
X-RAY DIFFRACTIONr_gen_planes_other0.0020.022476
X-RAY DIFFRACTIONr_mcbond_it1.4591.7466710
X-RAY DIFFRACTIONr_mcbond_other1.4581.7466709
X-RAY DIFFRACTIONr_mcangle_it2.1842.6098370
X-RAY DIFFRACTIONr_mcangle_other2.1842.6098371
X-RAY DIFFRACTIONr_scbond_it2.3122.3315953
X-RAY DIFFRACTIONr_scbond_other2.3122.3325954
X-RAY DIFFRACTIONr_scangle_other3.4653.2438735
X-RAY DIFFRACTIONr_long_range_B_refined6.80415.10312759
X-RAY DIFFRACTIONr_long_range_B_other6.80415.10612760
LS精密化 シェル解像度: 1.965→2.016 Å / Total num. of bins used: 20
Rfactor反射数%反射
Rfree0.355 416 -
Rwork0.317 7901 -
obs-7901 96.4 %
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
111.1631-6.835-10.96494.47396.828211.12380.01960.4253-0.2199-0.1728-0.1273-0.08790.1484-0.15150.10770.31370.02310.03040.2976-0.03470.2857-49.02013.66212.3284
22.7621-3.35241.544616.3891-0.8832.5651-0.08280.04110.00520.13670.17750.33560.1269-0.1874-0.09460.08470.00070.00480.1669-0.02030.0932-58.7155-0.444114.9974
321.314814.567-10.925111.0104-7.94946.2756-0.15540.4979-0.1416-0.17610.0799-0.15780.136-0.1980.07540.15230.0141-0.03110.15850.00280.1269-44.8484-9.771211.8482
40.122-0.1457-0.06310.19550.12480.16590.14080.040.1728-0.20880.0106-0.2178-0.14130.1348-0.15150.2934-0.0260.15940.1955-0.02580.3254-40.84514.249914.7834
52.16511.72650.270723.0807-6.01761.8908-0.0520.18860.2327-0.0819-0.0197-0.1545-0.06850.06750.07170.12860.00660.00680.1551-0.01420.1253-49.12562.887925.6719
612.3055.4664-6.9122.907-2.57755.6820.10510.09060.11560.0536-0.07720.0239-0.0843-0.0818-0.02790.12740.0072-0.02410.1052-0.00030.0958-40.3764-10.229625.3997
73.2229-3.4254-3.79643.75914.08534.58820.11420.13620.0826-0.2194-0.0722-0.1129-0.142-0.0479-0.04190.1308-0.0035-0.00180.1370.00810.1246-33.8644.497928.0919
85.27490.0604-0.58021.8759-1.10151.6479-0.02340.1133-0.1943-0.0931-0.0165-0.07120.1220.05920.03990.1106-0.0119-0.01720.0983-0.01570.0664-35.8998-6.769838.0556
93.7166-5.4294-3.144917.96318.91056.06510.0873-0.08490.2406-0.28180.1061-0.3713-0.220.0641-0.19340.1333-0.0048-0.01340.15720.01590.126-23.90433.222837.7257
105.27336.6482-2.987120.3651-9.64776.11920.1442-0.28150.01780.7501-0.07760.4568-0.0928-0.0854-0.06660.12380.0074-0.01780.1581-0.01470.1285-30.84541.528748.8523
1130.2557-1.7389-7.327916.14392.766516.7972-0.2785-1.0887-1.33270.6542-0.0870.41931.0925-0.08360.36550.21260.0042-0.06030.1985-0.00830.1489-26.1718-9.147550.9065
1219.355810.8948-10.180913.2298-8.657110.4997-0.38660.3769-0.3345-0.12720.29980.12410.4452-0.52720.08680.26070.0247-0.04480.2448-0.03680.1901-51.9438-10.36534.4801
130.06430.01590.02190.0579-0.02960.03050.00580.0857-0.0681-0.0785-0.0128-0.06740.05690.0490.00690.17660.00920.01170.1774-0.01010.1762-46.83954.45877.2174
142.148-1.94260.952215.7222-2.65541.6108-0.06190.05320.06840.08720.12290.21180.0244-0.0855-0.0610.1185-0.0013-0.00260.1643-0.01980.1056-55.5621-0.472918.9287
151.87440.1055-1.37270.1723-0.03881.1116-0.05350.1016-0.109-0.14430.0236-0.14060.03790.04760.02990.2002-0.01090.03780.1638-0.01030.1972-39.9389-3.731316.8024
161.20751.02030.503418.6124-4.41461.5945-0.07290.15380.1258-0.16890.0195-0.1647-0.01660.06360.05340.10630.0052-0.00410.1417-0.0080.1156-46.12341.843129.5985
1719.59764.4644-9.9995.7469-3.161913.321-0.10180.1894-0.0719-0.21540.0427-0.15870.08840.2830.05910.1050.0009-0.04560.091-0.01460.0675-37.9913-10.376429.6151
183.6713-6.2125-3.962213.21038.07855.16680.0676-0.05740.2252-0.28920.0788-0.3042-0.21750.0841-0.14640.12810.0038-0.02190.14130.01520.1055-29.22241.260428.7462
196.04092.49571.271222.0762-3.89065.63330.1573-0.15060.15240.3385-0.02660.2129-0.1798-0.0683-0.13070.07720.0096-0.0240.1298-0.01490.09-36.71693.681640.7281
2020.8889-0.0212-10.62970.0826-0.00715.46340.07720.07110.0981-0.073-0.0402-0.0751-0.05790.0479-0.0370.14290.00610.00640.14030.01070.1303-28.8706-9.198440.9152
215.4995-10.1474-5.172431.34813.942511.18780.0517-0.4210.6123-0.19730.3948-0.8098-0.28560.4177-0.44650.1572-0.0043-0.03260.20430.0290.1387-21.112.009441.6779
2213.47079.07-4.378535.0332-10.645512.4840.1566-0.22640.8640.4895-0.02960.2747-0.78560.1682-0.1270.1460.0106-0.03920.2126-0.01120.1526-26.86394.922651.6453
231.8953-5.106-0.039929.2084-1.77572.39870.01410.033-0.1615-0.26860.02340.22790.2281-0.0128-0.03750.1248-0.0125-0.02070.1957-0.0070.1427-61.6153-1.857411.8353
241.07210.3664-0.6580.2745-0.22130.4955-0.060.1464-0.1294-0.17160.0312-0.14220.05690.01650.02880.20890.00060.03260.1781-0.00960.1875-45.2237-2.92168.9418
251.9997-0.09731.064420.4531-2.55091.3178-0.04010.10390.18570.25460.08970.127-0.0933-0.097-0.04970.09470.0070.00150.1511-0.01220.0979-52.70850.841222.589
2621.89919.3715-9.57886.519-4.55486.9241-0.1530.0513-0.2371-0.1515-0.035-0.18150.14230.13590.18810.15170.0166-0.03110.1304-0.00070.1186-40.1745-10.481120.1445
271.5608-1.1599-1.61021.0411.0792.06850.07240.10050.0359-0.1402-0.0341-0.1183-0.03260.0156-0.03830.1252-0.0085-0.00340.136-0.0060.1346-36.93044.964724.7605
284.1295-3.85330.87489.7243-0.67091.5533-0.01010.16470.1031-0.214-0.0185-0.118-0.02020.04240.02860.1019-0.0083-0.01090.1156-0.01280.0801-42.9955-5.65135.5968
2925.7259-0.0629-11.51460.38080.66217.9672-0.0849-0.1138-0.403-0.0414-0.0817-0.10550.3216-0.00280.16660.1540.0056-0.01420.13850.00440.1145-29.8546-9.179630.5896
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1057.3735-8.6988-6.171410.35047.33245.34470.010.1226-0.1503-0.0138-0.08970.09220.14310.00450.07970.180.029-0.02170.15790.00160.11788.1469-1.636829.408
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1137.53135.5425-4.03145.5666-2.77473.6493-0.14290.1535-0.1706-0.0160.0589-0.01420.2019-0.15910.0840.14310.0206-0.03220.14440.00170.1182-1.6758-13.224122.815
11410.2738-3.3739-5.778510.18512.035513.25760.180.3210.2857-0.3819-0.0096-0.2066-0.2344-0.0158-0.17030.0773-0.0384-0.05330.108-0.00760.1212-3.97783.927427.8202
1157.8435-8.82962.370721.73-6.09468.7109-0.0859-0.1049-0.10260.23480.14390.27920.1382-0.394-0.0580.1201-0.0096-0.01220.1555-0.02960.097-7.217-8.992438.5437
11612.56955.9454-9.43622.8569-4.4597.12780.02930.01020.01050.0762-0.02340.049-0.04-0.0868-0.00590.1457-0.0067-0.00880.1514-0.01270.13034.7393-12.288635.6935
1176.4028-8.1756-5.279110.49546.78074.43430.11860.1080.1103-0.2138-0.1052-0.0827-0.0867-0.0433-0.01340.1267-0.0025-0.02560.14320.00570.10949.63351.006634.1297
1180.19941.8776-0.81521.3201-9.51754.30390.0436-0.0505-0.02040.38180.03310.18-0.1218-0.0896-0.07660.1056-0.0184-0.02570.1479-0.00580.1061.87270.090146.6546
11919.94363.4265-10.30383.6614-2.82538.4106-0.08680.0806-0.3026-0.0696-0.0694-0.07820.19360.09730.15610.1289-0.007-0.03780.109-0.02250.078710.997-9.264247.899
1205.0566-6.9814-2.723315.62145.14343.1710.1017-0.01780.239-0.1766-0.0312-0.1923-0.1728-0.0695-0.07060.1259-0.01-0.01320.14910.00680.11818.12514.597645.8137
1213.50295.3071-2.90299.9666-8.353513.49140.1046-0.2319-0.10360.4704-0.1701-0.1493-0.0210.20080.06550.22240.06680.00840.187-0.02950.146312.39452.331459.383
1221.03541.94080.03665.7446-0.75360.7606-0.04240.0483-0.1871-0.08520.0990.0950.2364-0.1945-0.05660.2233-0.02140.02880.2268-0.03380.2283-5.6696-11.742714.7662
1232.1147-1.1572-0.17015.39780.4420.1444-0.04470.09150.11890.07270.10860.1372-0.0753-0.0721-0.06390.13530.01670.0080.16180.00480.1399-12.4515-1.972225.8478
12419.220915.1899-8.249313.6081-8.30614.22560.1837-0.20150.18160.1761-0.19140.02150.0534-0.02710.00760.20010.0143-0.02820.121-0.03530.1223-5.3159-16.231330.6034
1253.3461-1.1363-1.47052.29780.41461.81020.08720.06420.0616-0.29170.0219-0.3155-0.04310.1139-0.10910.1356-0.003-0.02080.15520.01010.11775.1101-3.674325.2073
1262.6626-2.77392.114623.192-8.94835.3457-0.08420.05190.051-0.10770.0601-0.02970.1222-0.01630.0240.0997-0.0031-0.00550.1488-0.040.0967-3.7766-1.510538.828
12718.34785.7338-12.48011.8202-3.92938.5218-0.0770.0799-0.1372-0.0682-0.0162-0.03270.1083-0.02250.09320.13130.0007-0.02470.1285-0.01420.09369.1219-10.648938.1783
1287.6056-8.2263-4.97138.9755.44933.38630.0885-0.02460.348-0.18830.0549-0.3731-0.18120.0499-0.14340.1391-0.0119-0.0430.12060.00620.108712.41792.661638.1134
1293.23930.9636-0.644514.9137-7.37119.00820.02250.01610.10440.24030.09070.1579-0.0919-0.1278-0.11320.0881-0.0014-0.02130.1371-0.02310.11445.36424.156248.4698
13026.3461-0.7959-12.76370.03890.38596.20640.08860.04580.1595-0.0153-0.04270.0061-0.0857-0.0051-0.04590.1343-0.0073-0.01640.1263-0.01350.111112.7394-7.811251.8569
1317.5204-8.2015-3.898314.42997.31915.42020.11950.03820.2722-0.453-0.0037-0.4642-0.17060.1434-0.11580.1546-0.0064-0.02150.17890.01690.120922.37321.082648.5974
1327.8015-9.08432.044523.84830.77881.41620.1623-0.06290.2116-0.2089-0.0905-0.1619-0.0080.0102-0.07180.1596-0.0342-0.00280.1906-0.00930.195620.55629.057955.0895
13319.4147-11.9634-6.53999.43934.58443.79870.0814-0.0496-0.0053-0.2273-0.0429-0.19510.02710.288-0.03840.2732-0.0155-0.02630.26350.00070.228948.5983-31.2356108.0541
1340.07510.0174-0.04590.0049-0.01710.08150.05210.06990.12460.02720.01530.0246-0.14340.0067-0.06730.29350.00670.02370.270.00890.290742.1527-18.5913103.0616
1351.79021.11730.607312.129-0.54340.5324-0.0494-0.0710.17880.0580.0653-0.2886-0.09120.0523-0.01590.2161-0.0018-0.0020.24820.00620.165651.2777-25.477792.1562
1363.30411.3319-1.92352.8052-2.77575.130.05350.03170.02080.23910.07290.1602-0.1436-0.0239-0.12630.1493-0.0213-0.03220.1641-0.05060.130135.7996-25.956493.6153
1371.4011-4.5671-0.097416.55420.40120.1424-0.0516-0.08080.12930.22120.04960.1123-0.1241-0.10670.0020.18440.0335-0.00170.1885-0.02750.201642.7715-25.235580.4537
13817.702-1.4726-7.62271.67831.0026.83250.0499-0.17230.04180.1859-0.07180.1675-0.0321-0.18950.02190.14180.0029-0.02950.11720.00430.098838.4712-37.211682.0812
1391.98783.1041-2.551910.9374-7.33155.51020.00290.16830.22640.150.16370.2259-0.2734-0.1738-0.16660.1442-0.007-0.01710.1493-0.02120.125126.2922-27.230281.4684
1405.9791-6.90931.361418.25351.3844.92940.1510.16260.168-0.3307-0.0563-0.2328-0.00110.087-0.09480.127-0.0207-0.0190.1553-0.00310.129633.7881-26.331569.758
14121.24043.6332-9.67011.3653-1.53294.91160.0578-0.01510.04710.0629-0.0460.0609-0.0498-0.014-0.01170.1470.0038-0.01840.13980.00160.117627.9157-39.62471.305
1420.2881.5277-1.079914.6827-10.09757.0290.00370.12930.15240.07720.19260.3114-0.1435-0.2196-0.19630.16930.0072-0.00670.19960.02010.187118.4751-30.23969.0089
14327.3054-21.2246-8.746342.882614.243512.98210.3241.23861.1771-1.519-0.313-0.9602-0.7568-0.1719-0.01090.1501-0.0307-0.05410.2236-0.0050.142923.8495-27.716458.6524
1441.22323.0174-0.55568.9743-1.6860.47930.0333-0.0090.24520.3022-0.0219-0.0821-0.28490.0836-0.01140.3704-0.0199-0.02880.3188-0.00350.365456.7651-25.871499.7082
14515.4773-11.9485-0.598611.83791.83651.2747-0.0135-0.2648-0.38820.1481-0.0350.10210.19970.12050.04840.2447-0.0204-0.02070.2357-0.01340.222841.4339-30.7413106.183
1463.77231.8677-4.89021.5129-2.45996.43260.1215-0.04750.18720.1345-0.00850.1068-0.21820.0276-0.1130.20860.0018-0.02250.2333-0.00140.224341.9146-17.62295.7138
1478.25774.2733-0.999212.2044-0.3514.5012-0.02750.07590.1349-0.26780.0331-0.2462-0.19750.1832-0.00570.18340.006-0.01670.22170.00020.119649.5421-31.603587.5237
14823.2197-11.5304-5.16138.06263.92663.3162-0.0596-0.2225-0.31580.0701-0.0045-0.01940.27770.13140.0640.1785-0.0146-0.0240.1635-0.01320.143834.2519-34.916594.1986
1494.18387.1931-6.464912.4926-11.205210.05520.02990.0790.08580.02390.03760.0587-0.0169-0.057-0.06750.1644-0.0046-0.01430.1725-0.01030.156431.166-24.111188.3728
1502.8753-6.5058-0.556220.00122.45280.44450.0214-0.05730.1593-0.14330.0125-0.0653-0.08680.0027-0.03390.14-0.0135-0.00820.1651-0.00210.144339.8877-25.936277.3777
15115.3419-1.4351-7.90490.15520.76224.1332-0.1925-0.119-0.40940.06660.01130.05910.1950.03790.18120.1671-0.0053-0.01780.1521-0.00240.126730.8281-38.279780.2319
1522.27182.2919-0.811722.9045-11.498912.5251-0.0020.1950.34260.15890.17430.3644-0.1203-0.3495-0.17220.0967-0.0056-0.02850.1341-0.03170.101323.3165-27.931177.1982
1531.6387-0.8442-0.53562.30040.60191.258-0.00460.0382-0.0227-0.15550.0209-0.17790.02080.043-0.01620.12740.0018-0.01460.14260.00470.107629.716-34.272365.7012
1542.47092.1112-1.962432.5453-20.555413.6863-0.09980.23970.16010.32990.58151.1362-0.2437-0.8595-0.48170.20330.0188-0.0350.3968-0.16730.20814.7724-35.894967.8071
1551.98270.6206-2.2790.3027-0.71692.77640.088-0.2695-0.03170.1767-0.07640.0984-0.06030.1149-0.01160.3118-0.00940.00790.3056-0.00180.297947.6415-16.3088103.675
1562.5365.2687-0.192111.276-0.50830.74250.0146-0.02410.0478-0.0083-0.0157-0.1521-0.07480.22080.00110.24820.0021-0.0020.2562-0.0040.224754.437-30.865595.8414
15727.6184-10.5542-6.821210.45133.06617.1647-0.203-0.481-0.52090.22970.06440.13110.3480.25040.13860.2286-0.0235-0.03120.2031-0.01460.185639.1988-32.359102.0996
1580.05460.0645-0.08020.1036-0.08540.13490.02110.10080.09850.06960.08210.1565-0.0499-0.1863-0.10310.21190.03150.03180.28880.07990.279336.5161-20.95595.4821
1592.1709-2.3990.638614.47731.03550.5297-0.0322-0.12360.20570.01-0.00310.0753-0.1036-0.09960.03530.1646-0.00360.01160.17960.01440.150645.2059-22.014384.9439
16021.0263-5.9242-7.76181.72982.2285.57030.22960.02530.4026-0.1401-0.0791-0.1133-0.23320.2376-0.15050.16940.0058-0.01930.14110.0010.119440.4307-36.434886.0143
1613.08736.2876-5.67113.309-1210.87760.02280.11610.16450.15350.06630.0937-0.2327-0.0835-0.08910.1771-0.0183-0.03750.1881-0.00250.184928.9167-25.598485.0091
1624.2043-7.502-1.234314.15762.42640.48080.15840.14880.1145-0.4396-0.1056-0.3637-0.07130.0847-0.05280.1436-0.0035-0.01440.17110.00020.138737.8885-28.061472.8414
16321.6454-3.0968-7.81924.66093.8338.4606-0.0535-0.2938-0.34420.0793-0.12950.04110.1973-0.00140.18310.14380.0055-0.03930.13110.00750.091532.3191-39.373474.3224
1640.69590.2766-0.86240.7796-0.45221.27770.02310.08380.12380.00750.02350.0262-0.1557-0.0732-0.04660.1392-0.004-0.01180.1508-0.00350.146322.9604-28.462969.8492
16525.85667.0265-10.80123.1241-2.69239.7251-0.28480.6065-0.7194-0.33760.1277-0.05980.6142-0.09230.15720.17670.0188-0.0470.17710.01220.117727.6427-39.917960.5858
1664.4272-9.06521.781729.7377-7.31625.0680.07860.1086-0.0173-0.5239-0.00760.17340.151-0.0251-0.0710.1232-0.0286-0.020.1924-0.02150.145-19.8845-46.652522.8839
1675.89026.0848-3.70527.0481-4.14353.1853-0.18620.2726-0.2436-0.25390.0627-0.27050.1797-0.02460.12340.15150.0116-0.01890.1637-0.00010.15-3.1653-52.415719.5955
1686.3684-1.6018-5.46682.79852.11328.42550.13520.33470.1747-0.2773-0.0713-0.0895-0.1906-0.1205-0.06380.1301-0.0221-0.02680.1419-0.00410.1456-7.2405-36.27324.8077
16910.2866-3.82830.417110.527-3.7456.7297-0.1589-0.050.04640.33570.17180.2248-0.187-0.2821-0.01290.0929-0.0237-0.01290.103-0.03740.0381-8.9709-49.269936.471
17019.517613.5019-11.561112.5178-9.99929.7417-0.03280.1281-0.2603-0.0704-0.0503-0.12850.19740.0390.0830.13220.0044-0.03290.1401-0.00840.10296.6702-49.855129.7599
17110.3942-11.0221-6.771311.737.19464.49070.04160.0197-0.0224-0.0612-0.0116-0.04190.05260.0535-0.030.14410.0075-0.02050.1488-0.00260.11896.2614-37.277831.7958
1720.18011.1958-0.774710.897-6.9824.5001-0.01380.06480.0192-0.1471-0.0464-0.15990.06650.04390.06020.1013-0.0041-0.01120.13460.00060.1193-1.4768-36.541642.4543
17312.93653.1499-8.01221.0327-2.00525.0319-0.1310.018-0.2112-0.1048-0.0011-0.09880.12180.07260.13210.12050.0011-0.01510.1296-0.00990.09759.2011-47.639444.5524
1747.5558-8.5994-3.178114.0985.27854.0560.01590.00140.2870.00360.0133-0.0399-0.0911-0.0906-0.02920.1105-0.012-0.02370.13440.00220.096514.8338-34.80942.8123
1753.23282.5826-2.19149.4361-4.57766.94930.0487-0.0838-0.06550.2004-0.0897-0.09660.06870.16250.04110.0972-0.0054-0.01370.145-0.03680.11317.4612-36.706356.162
17618.5929-2.4377-5.39272.42650.186.6086-0.0143-0.2247-0.17390.002-0.0992-0.19850.0040.3680.11350.18830.0019-0.01760.13040.00170.138220.8468-42.18256.208
17718.4047-9.3287-13.07096.61467.600310.31020.12910.3201-0.1056-0.2378-0.1606-0.10050.0744-0.0090.03150.21760.0257-0.01930.20570.0190.1521-10.1366-40.572313.9434
1780.7927-4.25631.23724.2473-7.06032.1036-0.047-0.02730.03920.18260.13040.2478-0.0807-0.1207-0.08340.1392-0.0019-0.00950.1636-0.00340.1532-16.5927-44.953826.7676
17912.11827.8203-6.34927.3219-4.27936.071-0.19350.2629-0.214-0.04280.0283-0.06880.2145-0.18260.16520.14220.0198-0.03680.1174-0.01030.0981-3.7725-53.46125.0603
1800.1789-0.166-0.05890.20160.12080.12620.15660.09370.2117-0.2149-0.0135-0.2276-0.1250.0885-0.1430.28740.00980.1720.1840.01860.34290.1414-38.219324.569
1814.308-0.49770.305713.1442-6.1436.5368-0.04320.07140.1870.03610.07290.0328-0.1046-0.0655-0.02960.1113-0.007-0.00990.146-0.02430.1368-7.8579-35.172633.9553
18211.1759-7.66452.179111.1826-1.23596.0092-0.0721-0.2268-0.32260.16790.08150.26230.1008-0.2055-0.00950.1439-0.0179-0.01680.1074-0.02350.0848-4.1837-50.587240.5816
1832.84710.85550.51499.44970.72542.5229-0.00170.0206-0.12330.0949-0.02370.13010.1024-0.13040.02550.12060.0011-0.01940.13850.01010.09129.8695-43.305434.0765
1842.87170.4095-0.11989.5437-3.74847.18320.00810.00720.03810.0711-0.0358-0.0848-0.10370.10480.02780.0430.0017-0.0280.0938-0.02390.08942.3668-33.661543.7832
18516.6708-0.5804-6.67261.6703-0.31274.5286-0.0380.0152-0.161-0.0847-0.0457-0.11860.12780.16910.08370.1313-0.0094-0.0240.1084-0.02010.09129.2946-46.371849.6071
1864.5043-6.1943-2.038916.15414.52233.05340.0421-0.03520.1603-0.0307-0.0293-0.0017-0.1293-0.1-0.01280.125-0.0124-0.01160.15140.00770.117617.2136-32.750446.8301
1872.63384.892-2.7610.94-9.002113.55510.0541-0.1335-0.03930.4058-0.1351-0.1382-0.07620.20280.08110.1940.0363-0.00650.1767-0.03530.158311.4996-34.648160.4042
1884.39145.7209-1.55699.2609-2.8211.4911-0.14930.1414-0.255-0.12160.0846-0.09750.2101-0.16080.06470.16880.0126-0.01590.1829-0.00550.161-6.3172-52.69816.1117
1891.6092-0.6175-0.35494.001-0.34581.16960.01690.20020.1713-0.09590.0482-0.0081-0.176-0.076-0.0650.1054-0.0105-0.02250.1367-0.01430.1251-12.1337-40.316625.4579
19015.351710.2338-6.7339.9452-5.671811.79950.0646-0.09810.01390.0777-0.1339-0.02270.05890.01010.06920.16530.0092-0.02590.094-0.02840.0984-5.9943-54.299332.2586
1912.7359-1.2509-1.32292.0710.64441.30740.06910.03790.0741-0.24330.0373-0.3189-0.0280.1251-0.10640.1248-0.0016-0.01630.13790.00640.10684.3333-42.043326.5475
1921.4295-1.35861.273318.522-8.79224.5349-0.07570.23530.1962-0.3717-0.1043-0.32480.0750.16430.17990.0977-0.0030.00220.1146-0.01410.1084-4.4019-37.006738.7536
19316.3956.582-11.03453.0177-4.08097.8613-0.11770.1113-0.1924-0.0261-0.0087-0.0130.1543-0.03310.12630.1315-0.0012-0.03040.1247-0.02190.09416.0495-48.710540.8062
1946.8094-7.6181-4.49218.57415.08253.06430.05120.00580.2383-0.10510.028-0.2079-0.1277-0.0236-0.07920.12460.0007-0.03580.1228-0.00310.107911.5471-35.012939.1581
1952.98060.9198-0.800815.5767-8.761610.31970.0070.020.06970.190.07570.0803-0.032-0.0875-0.08270.0729-0.0044-0.02280.1215-0.02450.10154.5082-33.219749.4338
19625.1461-1.4906-11.94210.1680.69865.76210.09390.10710.1925-0.0894-0.0213-0.0782-0.06850.0637-0.07250.1513-0.00480.00610.15490.00180.130411.9311-45.031953.2521
1976.1292-6.9007-3.095911.59425.1114.3260.14650.0530.227-0.4193-0.0406-0.3795-0.15970.0377-0.10590.1619-0.0112-0.01950.19390.01150.143321.0092-34.825650.085
19812.291-9.27535.235436.33815.86535.8427-0.0058-0.15890.22750.1632-0.22820.5327-0.1327-0.42240.2340.22720.02750.00070.25910.06920.175320.0864-28.711156.237
精密化 TLSグループ
IDRefine-IDRefine TLS-IDAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1A483 - 490
2X-RAY DIFFRACTION2A491 - 499
3X-RAY DIFFRACTION3A500 - 508
4X-RAY DIFFRACTION4A509 - 514
5X-RAY DIFFRACTION5A515 - 522
6X-RAY DIFFRACTION6A523 - 531
7X-RAY DIFFRACTION7A532 - 542
8X-RAY DIFFRACTION8A543 - 554
9X-RAY DIFFRACTION9A555 - 563
10X-RAY DIFFRACTION10A564 - 570
11X-RAY DIFFRACTION11A571 - 575
12X-RAY DIFFRACTION12B483 - 491
13X-RAY DIFFRACTION13B492 - 498
14X-RAY DIFFRACTION14B499 - 508
15X-RAY DIFFRACTION15B509 - 522
16X-RAY DIFFRACTION16B523 - 531
17X-RAY DIFFRACTION17B532 - 537
18X-RAY DIFFRACTION18B538 - 547
19X-RAY DIFFRACTION19B548 - 553
20X-RAY DIFFRACTION20B554 - 563
21X-RAY DIFFRACTION21B564 - 570
22X-RAY DIFFRACTION22B571 - 575
23X-RAY DIFFRACTION23C483 - 492
24X-RAY DIFFRACTION24C493 - 506
25X-RAY DIFFRACTION25C507 - 515
26X-RAY DIFFRACTION26C516 - 523
27X-RAY DIFFRACTION27C524 - 534
28X-RAY DIFFRACTION28C535 - 542
29X-RAY DIFFRACTION29C543 - 548
30X-RAY DIFFRACTION30C549 - 554
31X-RAY DIFFRACTION31C555 - 563
32X-RAY DIFFRACTION32C564 - 570
33X-RAY DIFFRACTION33C571 - 575
34X-RAY DIFFRACTION34D483 - 491
35X-RAY DIFFRACTION35D492 - 501
36X-RAY DIFFRACTION36D502 - 510
37X-RAY DIFFRACTION37D511 - 519
38X-RAY DIFFRACTION38D520 - 526
39X-RAY DIFFRACTION39D527 - 536
40X-RAY DIFFRACTION40D537 - 548
41X-RAY DIFFRACTION41D549 - 554
42X-RAY DIFFRACTION42D555 - 563
43X-RAY DIFFRACTION43D564 - 570
44X-RAY DIFFRACTION44D571 - 575
45X-RAY DIFFRACTION45E483 - 492
46X-RAY DIFFRACTION46E493 - 501
47X-RAY DIFFRACTION47E502 - 510
48X-RAY DIFFRACTION48E511 - 522
49X-RAY DIFFRACTION49E523 - 532
50X-RAY DIFFRACTION50E533 - 538
51X-RAY DIFFRACTION51E539 - 547
52X-RAY DIFFRACTION52E548 - 554
53X-RAY DIFFRACTION53E555 - 564
54X-RAY DIFFRACTION54E565 - 570
55X-RAY DIFFRACTION55E571 - 575
56X-RAY DIFFRACTION56F483 - 491
57X-RAY DIFFRACTION57F492 - 510
58X-RAY DIFFRACTION58F511 - 516
59X-RAY DIFFRACTION59F517 - 524
60X-RAY DIFFRACTION60F525 - 534
61X-RAY DIFFRACTION61F535 - 540
62X-RAY DIFFRACTION62F541 - 548
63X-RAY DIFFRACTION63F549 - 553
64X-RAY DIFFRACTION64F554 - 563
65X-RAY DIFFRACTION65F564 - 570
66X-RAY DIFFRACTION66F571 - 575
67X-RAY DIFFRACTION67G483 - 490
68X-RAY DIFFRACTION68G491 - 503
69X-RAY DIFFRACTION69G504 - 510
70X-RAY DIFFRACTION70G511 - 522
71X-RAY DIFFRACTION71G523 - 530
72X-RAY DIFFRACTION72G531 - 537
73X-RAY DIFFRACTION73G538 - 548
74X-RAY DIFFRACTION74G549 - 553
75X-RAY DIFFRACTION75G554 - 563
76X-RAY DIFFRACTION76G564 - 570
77X-RAY DIFFRACTION77G571 - 575
78X-RAY DIFFRACTION78H484 - 489
79X-RAY DIFFRACTION79H490 - 505
80X-RAY DIFFRACTION80H506 - 511
81X-RAY DIFFRACTION81H512 - 518
82X-RAY DIFFRACTION82H519 - 524
83X-RAY DIFFRACTION83H525 - 531
84X-RAY DIFFRACTION84H532 - 541
85X-RAY DIFFRACTION85H542 - 548
86X-RAY DIFFRACTION86H549 - 554
87X-RAY DIFFRACTION87H555 - 568
88X-RAY DIFFRACTION88H569 - 575
89X-RAY DIFFRACTION89I484 - 491
90X-RAY DIFFRACTION90I492 - 498
91X-RAY DIFFRACTION91I499 - 507
92X-RAY DIFFRACTION92I508 - 514
93X-RAY DIFFRACTION93I515 - 522
94X-RAY DIFFRACTION94I523 - 532
95X-RAY DIFFRACTION95I533 - 538
96X-RAY DIFFRACTION96I539 - 548
97X-RAY DIFFRACTION97I549 - 555
98X-RAY DIFFRACTION98I556 - 568
99X-RAY DIFFRACTION99I569 - 575
100X-RAY DIFFRACTION100J483 - 492
101X-RAY DIFFRACTION101J493 - 502
102X-RAY DIFFRACTION102J503 - 510
103X-RAY DIFFRACTION103J511 - 516
104X-RAY DIFFRACTION104J517 - 522
105X-RAY DIFFRACTION105J523 - 530
106X-RAY DIFFRACTION106J531 - 538
107X-RAY DIFFRACTION107J539 - 546
108X-RAY DIFFRACTION108J547 - 553
109X-RAY DIFFRACTION109J554 - 563
110X-RAY DIFFRACTION110J564 - 575
111X-RAY DIFFRACTION111K483 - 491
112X-RAY DIFFRACTION112K492 - 498
113X-RAY DIFFRACTION113K499 - 510
114X-RAY DIFFRACTION114K511 - 518
115X-RAY DIFFRACTION115K519 - 524
116X-RAY DIFFRACTION116K525 - 530
117X-RAY DIFFRACTION117K531 - 540
118X-RAY DIFFRACTION118K541 - 546
119X-RAY DIFFRACTION119K547 - 554
120X-RAY DIFFRACTION120K555 - 563
121X-RAY DIFFRACTION121K564 - 575
122X-RAY DIFFRACTION122L484 - 496
123X-RAY DIFFRACTION123L497 - 506
124X-RAY DIFFRACTION124L507 - 512
125X-RAY DIFFRACTION125L513 - 522
126X-RAY DIFFRACTION126L523 - 532
127X-RAY DIFFRACTION127L533 - 540
128X-RAY DIFFRACTION128L541 - 546
129X-RAY DIFFRACTION129L547 - 553
130X-RAY DIFFRACTION130L554 - 561
131X-RAY DIFFRACTION131L562 - 569
132X-RAY DIFFRACTION132L570 - 575
133X-RAY DIFFRACTION133M484 - 491
134X-RAY DIFFRACTION134M492 - 498
135X-RAY DIFFRACTION135M499 - 510
136X-RAY DIFFRACTION136M511 - 524
137X-RAY DIFFRACTION137M525 - 530
138X-RAY DIFFRACTION138M531 - 537
139X-RAY DIFFRACTION139M538 - 548
140X-RAY DIFFRACTION140M549 - 553
141X-RAY DIFFRACTION141M554 - 563
142X-RAY DIFFRACTION142M564 - 570
143X-RAY DIFFRACTION143M571 - 575
144X-RAY DIFFRACTION144N484 - 494
145X-RAY DIFFRACTION145N495 - 500
146X-RAY DIFFRACTION146N501 - 510
147X-RAY DIFFRACTION147N511 - 518
148X-RAY DIFFRACTION148N519 - 524
149X-RAY DIFFRACTION149N525 - 530
150X-RAY DIFFRACTION150N531 - 540
151X-RAY DIFFRACTION151N541 - 548
152X-RAY DIFFRACTION152N549 - 554
153X-RAY DIFFRACTION153N555 - 568
154X-RAY DIFFRACTION154N569 - 575
155X-RAY DIFFRACTION155O484 - 494
156X-RAY DIFFRACTION156O495 - 502
157X-RAY DIFFRACTION157O503 - 508
158X-RAY DIFFRACTION158O509 - 514
159X-RAY DIFFRACTION159O515 - 522
160X-RAY DIFFRACTION160O523 - 530
161X-RAY DIFFRACTION161O531 - 540
162X-RAY DIFFRACTION162O541 - 547
163X-RAY DIFFRACTION163O548 - 553
164X-RAY DIFFRACTION164O554 - 567
165X-RAY DIFFRACTION165O568 - 575
166X-RAY DIFFRACTION166P483 - 491
167X-RAY DIFFRACTION167P492 - 501
168X-RAY DIFFRACTION168P502 - 510
169X-RAY DIFFRACTION169P511 - 518
170X-RAY DIFFRACTION170P519 - 524
171X-RAY DIFFRACTION171P525 - 530
172X-RAY DIFFRACTION172P531 - 538
173X-RAY DIFFRACTION173P539 - 548
174X-RAY DIFFRACTION174P549 - 554
175X-RAY DIFFRACTION175P555 - 564
176X-RAY DIFFRACTION176P565 - 575
177X-RAY DIFFRACTION177Q484 - 491
178X-RAY DIFFRACTION178Q492 - 498
179X-RAY DIFFRACTION179Q499 - 508
180X-RAY DIFFRACTION180Q509 - 514
181X-RAY DIFFRACTION181Q515 - 520
182X-RAY DIFFRACTION182Q521 - 527
183X-RAY DIFFRACTION183Q528 - 536
184X-RAY DIFFRACTION184Q537 - 545
185X-RAY DIFFRACTION185Q546 - 554
186X-RAY DIFFRACTION186Q555 - 563
187X-RAY DIFFRACTION187Q564 - 575
188X-RAY DIFFRACTION188R484 - 494
189X-RAY DIFFRACTION189R495 - 506
190X-RAY DIFFRACTION190R507 - 512
191X-RAY DIFFRACTION191R513 - 522
192X-RAY DIFFRACTION192R523 - 530
193X-RAY DIFFRACTION193R531 - 540
194X-RAY DIFFRACTION194R541 - 546
195X-RAY DIFFRACTION195R547 - 553
196X-RAY DIFFRACTION196R554 - 561
197X-RAY DIFFRACTION197R562 - 570
198X-RAY DIFFRACTION198R571 - 575

+
万見について

-
お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

+
2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る