[English] 日本語
![](img/lk-miru.gif)
- PDB-3htq: the hemagglutinin structure of an avian H1N1 influenza A virus in... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 3htq | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | the hemagglutinin structure of an avian H1N1 influenza A virus in complex with LSTc | |||||||||
![]() |
| |||||||||
![]() | VIRAL PROTEIN / receptor | |||||||||
Function / homology | ![]() clathrin-dependent endocytosis of virus by host cell / host cell surface receptor binding / apical plasma membrane / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / host cell plasma membrane Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Wang, G. / Li, A. / Zhang, Q. / Wu, C. / Zhang, R. / Cai, Q. / Song, W. / Yuen, K.-Y. | |||||||||
![]() | ![]() Title: The hemagglutinin structure of an avian H1N1 influenza A virus Authors: Lin, T. / Wang, G. / Li, A. / Zhang, Q. / Wu, C. / Zhang, R. / Cai, Q. / Song, W. / Yuen, K.-Y. | |||||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 117.8 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 89.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 25.6 KB | Display | |
Data in CIF | ![]() | 35 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3htoC ![]() 3htpC ![]() 3httC ![]() 1ru7S C: citing same article ( S: Starting model for refinement |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
|
-
Components
-Protein , 2 types, 2 molecules AB
#1: Protein | Mass: 35946.227 Da / Num. of mol.: 1 / Fragment: HA1 chain, UNP residues 15-338 / Source method: isolated from a natural source Source: (natural) ![]() Strain: WDK/JX/12416/2005 / References: UniProt: C7C6F1 |
---|---|
#2: Protein | Mass: 18288.166 Da / Num. of mol.: 1 / Source method: isolated from a natural source Source: (natural) ![]() Strain: WDK/JX/12416/2005 / References: UniProt: C7C6F1*PLUS |
-Sugars , 3 types, 4 molecules ![](data/chem/img/NAG.gif)
#3: Polysaccharide | 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Source method: isolated from a genetically manipulated source |
---|---|
#4: Polysaccharide | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose Source method: isolated from a genetically manipulated source |
#5: Sugar |
-Non-polymers , 1 types, 194 molecules ![](data/chem/img/HOH.gif)
#6: Water | ChemComp-HOH / |
---|
-Details
Sequence details | THERE IS NO UNP REFERENCE SEQUENCE DATABASE FOR CHAIN B AT THE TIME OF PROCESSING |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 6.003679 Å3/Da / Density % sol: 79.512558 % |
---|---|
Crystal grow | Temperature: 295 K / Method: vapor diffusion, hanging drop / pH: 6.8 Details: 100mM HEPES, 40% PEG 400, 120mM KSCN, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K, pH 6.8 |
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Dec 6, 2007 / Details: Bent conical Si-mirror |
Radiation | Monochromator: Bent Ge(111) monochromator / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.955→50 Å / Num. obs: 27329 / % possible obs: 99.5 % / Observed criterion σ(I): 0 / Redundancy: 21.7 % / Biso Wilson estimate: 48.99 Å2 / Rmerge(I) obs: 0.199 / Net I/σ(I): 21.3 |
Reflection shell | Resolution: 2.95→3.06 Å / Redundancy: 17.7 % / Rmerge(I) obs: 0.57 / Mean I/σ(I) obs: 8 / % possible all: 96.5 |
-
Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1RU7 Resolution: 2.955→49.61 Å / Occupancy max: 1 / Occupancy min: 1 / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: MAXIMUM LIKELIHOOD
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 149.06 Å2 / Biso mean: 62.87 Å2 / Biso min: 30.42 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.955→49.61 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LS refinement shell | Resolution: 2.95→2.97 Å / Total num. of bins used: 50
|