- PDB-4mzy: Crystal structure of enterococcus faecalis nicotinate phosphoribo... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 4mzy
Title
Crystal structure of enterococcus faecalis nicotinate phosphoribosyltransferase with malonate and phosphate bound
Components
NICOTINATE PHOSPHORIBOSYLTRANSFERASE
Keywords
TRANSFERASE / STRUCTURAL GENOMICS / PSI / ROTEIN STRUCTURE INITIATIVE / NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS / NYSGXRC / New York Structural Genomics Research Consortium / NYSGRC / Protein Structure Initiative
Function / homology
Function and homology information
nicotinate phosphoribosyltransferase / nicotinate phosphoribosyltransferase activity / NAD salvage / glycosyltransferase activity / cytosol Similarity search - Function
Resolution: 1.95→25.78 Å / Cor.coef. Fo:Fc: 0.971 / Cor.coef. Fo:Fc free: 0.963 / SU B: 2.912 / SU ML: 0.082 / Cross valid method: THROUGHOUT / ESU R: 0.122 / ESU R Free: 0.115 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.18587
1396
3.1 %
RANDOM
Rwork
0.1537
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obs
0.15477
43356
99.56 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: BABINET MODEL WITH MASK