- PDB-4jzp: Crystal structure of BAP31 vDED at acidic pH -
+
データを開く
IDまたはキーワード:
読み込み中...
-
基本情報
登録情報
データベース: PDB / ID: 4jzp
タイトル
Crystal structure of BAP31 vDED at acidic pH
要素
B-cell receptor-associated protein 31
キーワード
APOPTOSIS / TRANSPORT PROTEIN
機能・相同性
機能・相同性情報
positive regulation of retrograde protein transport, ER to cytosol / positive regulation of mitochondrial calcium ion concentration / protein localization to endoplasmic reticulum exit site / mitochondria-associated endoplasmic reticulum membrane contact site / Apoptotic execution phase / positive regulation of ERAD pathway / perinuclear endoplasmic reticulum / negative regulation of endoplasmic reticulum calcium ion concentration / positive regulation of ubiquitin-dependent protein catabolic process / protein targeting to mitochondrion ...positive regulation of retrograde protein transport, ER to cytosol / positive regulation of mitochondrial calcium ion concentration / protein localization to endoplasmic reticulum exit site / mitochondria-associated endoplasmic reticulum membrane contact site / Apoptotic execution phase / positive regulation of ERAD pathway / perinuclear endoplasmic reticulum / negative regulation of endoplasmic reticulum calcium ion concentration / positive regulation of ubiquitin-dependent protein catabolic process / protein targeting to mitochondrion / clathrin-coated vesicle / Golgi cisterna membrane / RSV-host interactions / Apoptotic cleavage of cellular proteins / MHC class I protein binding / positive regulation of cysteine-type endopeptidase activity involved in apoptotic process / : / RHOA GTPase cycle / endoplasmic reticulum to Golgi vesicle-mediated transport / positive regulation of intrinsic apoptotic signaling pathway / endoplasmic reticulum-Golgi intermediate compartment membrane / response to endoplasmic reticulum stress / lipid droplet / lumenal side of endoplasmic reticulum membrane / Antigen Presentation: Folding, assembly and peptide loading of class I MHC / intracellular protein transport / positive regulation of cytosolic calcium ion concentration / spermatogenesis / Golgi membrane / apoptotic process / protein-containing complex binding / endoplasmic reticulum membrane / endoplasmic reticulum / mitochondrion / membrane / plasma membrane / cytosol 類似検索 - 分子機能
解像度: 2.1→2.21 Å / 冗長度: 6.2 % / Mean I/σ(I) obs: 3.99 / Rsym value: 0.424 / % possible all: 99.7
-
解析
ソフトウェア
名称
バージョン
分類
XDS
データスケーリング
PHASER
位相決定
REFMAC
5.7.0029
精密化
XDS
データ削減
XSCALE
データスケーリング
精密化
構造決定の手法: 単波長異常分散 / 解像度: 2.1→28.57 Å / Cor.coef. Fo:Fc: 0.959 / Cor.coef. Fo:Fc free: 0.963 / SU B: 2.19 / SU ML: 0.062 / 交差検証法: THROUGHOUT / ESU R: 0.023 / ESU R Free: 0.021 / 立体化学のターゲット値: MAXIMUM LIKELIHOOD / 詳細: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
Rfactor
反射数
%反射
Selection details
Rfree
0.1802
563
4.1 %
RANDOM
Rwork
0.16239
-
-
-
obs
0.16313
13261
99.42 %
-
all
-
13291
-
-
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK