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- PDB-4jx1: Crystal structure of reduced Cytochrome P450cam-putidaredoxin com... -
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Open data
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Basic information
Entry | Database: PDB / ID: 4jx1 | ||||||
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Title | Crystal structure of reduced Cytochrome P450cam-putidaredoxin complex bound to camphor and 5-exo-hydroxycamphor | ||||||
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![]() | OXIDOREDUCTASE/ELECTRON TRANSPORT / reduced P450cam-Pdx complex / redox partners / OXIDOREDUCTASE-ELECTRON TRANSPORT complex | ||||||
Function / homology | ![]() P450-containing electron transport chain / camphor 5-monooxygenase / camphor 5-monooxygenase activity / (+)-camphor catabolic process / cholest-4-en-3-one 26-monooxygenase activity / steroid hydroxylase activity / cholesterol catabolic process / 2 iron, 2 sulfur cluster binding / iron ion binding / heme binding ...P450-containing electron transport chain / camphor 5-monooxygenase / camphor 5-monooxygenase activity / (+)-camphor catabolic process / cholest-4-en-3-one 26-monooxygenase activity / steroid hydroxylase activity / cholesterol catabolic process / 2 iron, 2 sulfur cluster binding / iron ion binding / heme binding / metal ion binding / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Tripathi, S.M. / Li, H. / Poulos, T.L. | ||||||
![]() | ![]() Title: Structural basis for effector control and redox partner recognition in cytochrome P450. Authors: Tripathi, S. / Li, H. / Poulos, T.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 1.2 MB | Display | ![]() |
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PDB format | ![]() | 1000.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 2 MB | Display | ![]() |
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Full document | ![]() | 2.1 MB | Display | |
Data in XML | ![]() | 93.9 KB | Display | |
Data in CIF | ![]() | 138.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 4jwsC ![]() 4jwuC ![]() 1xloS ![]() 2cppS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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3 | ![]()
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4 | ![]()
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Unit cell |
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Components
-Protein , 2 types, 8 molecules ABEFCDGH
#1: Protein | Mass: 46597.715 Da / Num. of mol.: 4 / Mutation: K344C, C334A, C59S, C86S, C137S, C286S Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Protein | Mass: 12360.977 Da / Num. of mol.: 4 / Mutation: C85S, C73S, D19C Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Non-polymers , 7 types, 1968 molecules ![](data/chem/img/HEM.gif)
![](data/chem/img/CAM.gif)
![](data/chem/img/CAH.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/FES.gif)
![](data/chem/img/1N0.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/CAM.gif)
![](data/chem/img/CAH.gif)
![](data/chem/img/CA.gif)
![](data/chem/img/FES.gif)
![](data/chem/img/1N0.gif)
![](data/chem/img/HOH.gif)
#3: Chemical | ChemComp-HEM / #4: Chemical | ChemComp-CAM / #5: Chemical | #6: Chemical | ChemComp-CA / #7: Chemical | ChemComp-FES / #8: Chemical | ChemComp-1N0 / | #9: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.18 Å3/Da / Density % sol: 43.69 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 7.4 Details: 0.2 M calcium acetate hydrate, 14-22% PEG3350, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Jan 20, 2013 |
Radiation | Monochromator: Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.09 Å / Relative weight: 1 |
Reflection | Resolution: 2.087→57.2 Å / Num. obs: 118774 / % possible obs: 98.8 % / Observed criterion σ(I): 2 / Redundancy: 4.4 % / Rmerge(I) obs: 0.065 / Rsym value: 0.065 / Net I/σ(I): 15.3 |
Reflection shell | Resolution: 2.087→2.2 Å / Redundancy: 4.3 % / Rmerge(I) obs: 0.159 / Mean I/σ(I) obs: 7.9 / Rsym value: 0.159 / % possible all: 98.3 |
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Processing
Software |
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRIES 2CPP AND 1XLO Resolution: 2.087→44.87 Å / SU ML: 0.2 / σ(F): 1.37 / Phase error: 19.66 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.087→44.87 Å
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Refine LS restraints |
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LS refinement shell |
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group |
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