- PDB-4jcp: Structure of Cyclophilin B from Brugia malayi -
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Basic information
Entry
Database: PDB / ID: 4jcp
Title
Structure of Cyclophilin B from Brugia malayi
Components
Peptidyl-prolyl cis-trans isomerase
Keywords
ISOMERASE / Seattle Structural Genomics Center for Infectious Disease / SSGCID / cyclophilin B / NIAID / National Institute of Allergy and Infectious Diseases
Monochromator: Side scattering I-beam bent single crystal; asymmetric cut 4.9650 deg. Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.13 Å / Relative weight: 1
Reflection
Resolution: 1.65→19.81 Å / Num. obs: 23092 / % possible obs: 99.2 % / Observed criterion σ(I): -3 / Biso Wilson estimate: 19.512 Å2 / Rmerge(I) obs: 0.073 / Net I/σ(I): 21.81
Reflection shell
Diffraction-ID: 1
Resolution (Å)
Highest resolution (Å)
Rmerge(I) obs
Mean I/σ(I) obs
Num. measured obs
Num. unique obs
% possible all
1.65-1.69
0.404
4.32
9171
1549
91.5
1.69-1.74
0.37
5.6
11873
1624
98.5
1.74-1.79
0.328
6.92
13366
1609
100
1.79-1.84
0.254
8.79
12954
1550
100
1.84-1.91
0.21
10.39
12485
1500
100
1.91-1.97
0.159
13.5
12312
1472
100
1.97-2.05
0.133
15.78
11887
1422
100
2.05-2.13
0.109
18.59
11593
1387
100
2.13-2.22
0.094
21.62
11061
1322
100
2.22-2.33
0.086
23.54
10230
1230
100
2.33-2.46
0.082
24.32
9990
1194
100
2.46-2.61
0.074
26.25
9574
1155
100
2.61-2.79
0.062
30.44
8930
1080
100
2.79-3.01
0.052
35.43
8228
996
100
3.01-3.3
0.043
42.9
7557
920
99.9
3.3-3.69
0.035
48.75
6868
857
100
3.69-4.26
0.032
51.07
5926
757
99.9
4.26-5.22
0.029
54.29
5129
652
99.8
5.22-7.38
0.035
45.06
4032
516
99.8
7.38
0.028
52.8
2138
300
93.2
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Phasing
Phasing
Method: molecular replacement
Phasing MR
Model details: Phaser MODE: MR_AUTO
Highest resolution
Lowest resolution
Rotation
5.02 Å
19.81 Å
Translation
5.02 Å
19.81 Å
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Processing
Software
Name
Version
Classification
NB
XSCALE
datascaling
PHASER
2.5.2
phasing
REFMAC
refinement
PDB_EXTRACT
3.11
dataextraction
XDS
datareduction
Refinement
Method to determine structure: MOLECULAR REPLACEMENT Starting model: 1DYW
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