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- PDB-4jb0: Rhodopseudomonas palustris (strain CGA009) Rp1789 transport protein -
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Open data
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Basic information
Entry | Database: PDB / ID: 4jb0 | ||||||
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Title | Rhodopseudomonas palustris (strain CGA009) Rp1789 transport protein | ||||||
![]() | branched-chain amino acid transport system substrate-binding protein | ||||||
![]() | TRANSPORT PROTEIN / aromatic lignin binding transport / ABC transport system binding protein / Bind small aromatic ligands from lignin degradation | ||||||
Function / homology | ![]() : / Leucine-binding protein domain / Periplasmic binding protein / Response regulator / Periplasmic binding protein-like I / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Salmon, R. | ||||||
![]() | ![]() Title: The CouPSTU and TarPQM Transporters in Rhodopseudomonas palustris: Redundant, Promiscuous Uptake Systems for Lignin-Derived Aromatic Substrates. Authors: Salmon, R.C. / Cliff, M.J. / Rafferty, J.B. / Kelly, D.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 87.1 KB | Display | ![]() |
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PDB format | ![]() | 64 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 39745.223 Da / Num. of mol.: 1 / Fragment: Aromatic compound transport protein Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: ATCC BAA-98 / CGA009 / Gene: 1789 / Production host: ![]() ![]() |
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#2: Chemical | ChemComp-FER / |
#3: Chemical | ChemComp-ENO / |
#4: Chemical | ChemComp-GOL / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.01 Å3/Da / Density % sol: 38.91 % |
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Crystal grow | Temperature: 290 K / Method: vapor diffusion, hanging drop / pH: 4.5 Details: 0.1M sodium acetate, pH 4.5, 25% w/v PEG3350, VAPOR DIFFUSION, HANGING DROP, temperature 290K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Mar 4, 2012 |
Radiation | Monochromator: Si channel / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9184 Å / Relative weight: 1 |
Reflection | Resolution: 1.91→44.3 Å / Num. all: 46986 / % possible obs: 97.5 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 3 |
Reflection shell | Resolution: 1.91→1.96 Å / Mean I/σ(I) obs: 1.6 / Num. unique all: 3551 / % possible all: 98.9 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 20.307 Å2
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Refinement step | Cycle: LAST / Resolution: 1.91→42.24 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.91→1.96 Å / Total num. of bins used: 20
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